Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1426 ATGAGTTGGTTTAAATTACCTAGTATTATTGGTTTGGTTTTGATATTGGTTGGAGTTTGTAAGGCTCAGCTGAACCCGACATTTTACGACGAATCATGCCCCGATTTGGCGATCATTGTACATGATGTGGTGCAGCGGGCTTCGGCGAGTGATCCTAGAGCAGGACCCAGGGTCATGCGTCTTCATTTCCACGATTGCTTTGTCCAAGGGTGTGATGGATCGATTTTACTAGAGGATCAGGAAGGTGTAGTGAGTGAGCGTGGTGCTCTTGGAAACGCAAACATCACTGGATTTAATATAGTAGACGACATCAAAGCTGCTGTAGAAGATGCTTGTCCTGGTGTCGTTTCTTGTGCCGACATCTTAGCCATCGCTTCTCTAGTATCCTCTCAATTGGCAGGAGGGCCTTGTTGGGAGGTTCAATATGGAAGAAGAGACGGCAGAACAGCAAACTTAATTGAAGCTAATACTAGCCTTCCAAGTCCTTTTGAAAATGTTACTCAACTTAAAGGAAAGTTCTCTAGAGTTGGTCTTGACACTACTGATCTCGTTGCTTTATCCGGTGCCCACACATTTGGTCGAGCAAGATGTCGATTTTTCGACCGTCGATTAAACGTTTCGAACCCAGATCGAACACTAGACGCAACATACGCAGATCAGCTTAGTCAAACTTGTCAAAGCAGCAGAGACACATTCGTAAATCTCGACCCAACAACGCCCGACGATTTCGACAATAACTACTACACAAACCTTCAAAGCAACTTTGGACTTCTTACAAGTGATCAAGTTCTCCACTCTACCGATGGAGAAGACACTGTTGACATTGTTAACATCTTTGCTGGAGACCAAGATCAGTTCTTTTCCAGCTTCGGTCAGTCCATGATTAATATGGGAAATATTCGTCCTTTAACTGGAAACCAGGGAGAAATTAGGTGTAATTGCAGAAGGCTCAATTGA 957 43.99 MSWFKLPSIIGLVLILVGVCKAQLNPTFYDESCPDLAIIVHDVVQRASASDPRAGPRVMRLHFHDCFVQGCDGSILLEDQEGVVSERGALGNANITGFNIVDDIKAAVEDACPGVVSCADILAIASLVSSQLAGGPCWEVQYGRRDGRTANLIEANTSLPSPFENVTQLKGKFSRVGLDTTDLVALSGAHTFGRARCRFFDRRLNVSNPDRTLDATYADQLSQTCQSSRDTFVNLDPTTPDDFDNNYYTNLQSNFGLLTSDQVLHSTDGEDTVDIVNIFAGDQDQFFSSFGQSMINMGNIRPLTGNQGEIRCNCRRLN 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55950422 55952063 + evm.model.ptg000010l.78 HCH2g1426 540651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1426 318 Gene3D - 28 318 - -
HCH2g1426 318 FunFam Peroxidase 160 297 - -
HCH2g1426 318 ProSiteProfiles Plant heme peroxidase family profile. 23 318 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
HCH2g1426 318 Gene3D Peroxidase, domain 2 160 297 - -
HCH2g1426 318 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
HCH2g1426 318 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 SUPERFAMILY Heme-dependent peroxidases 23 318 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 CDD secretory_peroxidase 23 316 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH2g1426 318 PANTHER PEROXIDASE 72-RELATED 13 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 Pfam Peroxidase 40 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1426 318 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1426 HCH-Chr2:55950422 HCH5g0712 HCH-Chr5:5165344 1.90E-99 dispersed
HCH2g1426 HCH-Chr2:55950422 HCH2g1427 HCH-Chr2:55957542 9.10E-115 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1426 K00430 - csv:101212717 472.626