Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1427 ATGGCTTCTTTTAAACTTCTTTTCTTTGTGTTTTGTATGGTAATTATGTCATCAAATGCTCAGCTTACCACCACATTCTATGCCTCAACATGTCCCAATGTATCAAGCATGGTGCGTGGTGTGTTGCAGCAAGCTCTTCTGAGTGATGGTAGAGCTGCAGCCAAAGTCATGCGTCTTCATTTCCACGATTGCTTCGTTGACGGTTGTGATGGTTCGGTTTTACTTGAGGATCAACCCGGCATAACGAGCGAGCTAGGTGCGCCTGGAAACGGCGGAATCACTGGATTTAATATCGTTGATGACATGAAAACTGCAGTCGAAAATGTTTGCCCAGGCATCGTCTCGTGTGCTGACATCCTTGCTCTTTCTGCTCAAGATGCTGTTTCCTTGACAGGAGGTCCAAGTTGGACCGTTCCAGTGGGGAGAAGAGATGGTAGAACAGCTAATGTAGATGGTGCCAGGAGTGGGCTTCCAAGTCCTTTTGATGATCTCACACAAATTCGGCCCATATTCACCAATCTTAATCTTGACAACACTGATCTTGTTGCTCTTTCTGGTGCACACACATTTGGTCGTTCAAGATGCAGATTTTTCGACAATAATCGATTAAACACATCGAACCCCGACCCGACTTTGGATTCGGCATATGCAGATGAGCTTCGACAACTTTGTCAAAGTGGAAGAGACACATTTGTGAATCTTGACCCCACAACTCCAGATACCTTTGACAACAACTACTTCACAAATCTTCAGAACAACCGAGGACTTTTGAGAAGTGATCAAGTTCTTTTCTCTACTAGTGGAGATCCTACTGTTGATATTGTTAACAGATTTGCAGCCAGCCAATCCGAGTTTTTCACCAGTTTCATTCAATCAATGATTAACATGGGAAATCTTAGCCCTTTAACTGGAACAAGTGGAGAAATCAGGACTAACTGCAGAAGACTTAATTAA 954 43.5 MASFKLLFFVFCMVIMSSNAQLTTTFYASTCPNVSSMVRGVLQQALLSDGRAAAKVMRLHFHDCFVDGCDGSVLLEDQPGITSELGAPGNGGITGFNIVDDMKTAVENVCPGIVSCADILALSAQDAVSLTGGPSWTVPVGRRDGRTANVDGARSGLPSPFDDLTQIRPIFTNLNLDNTDLVALSGAHTFGRSRCRFFDNNRLNTSNPDPTLDSAYADELRQLCQSGRDTFVNLDPTTPDTFDNNYFTNLQNNRGLLRSDQVLFSTSGDPTVDIVNRFAASQSEFFTSFIQSMINMGNLSPLTGTSGEIRTNCRRLN 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55957542 55958845 + evm.model.ptg000010l.77 HCH2g1427 540652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1427 317 Gene3D Peroxidase, domain 2 158 296 - -
HCH2g1427 317 Gene3D - 26 317 - -
HCH2g1427 317 SUPERFAMILY Heme-dependent peroxidases 21 317 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
HCH2g1427 317 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601(InterPro)
HCH2g1427 317 FunFam Peroxidase 25 168 - -
HCH2g1427 317 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 ProSiteProfiles Plant heme peroxidase family profile. 21 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 Pfam Peroxidase 38 280 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 CDD secretory_peroxidase 21 315 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH2g1427 317 PANTHER PEROXIDASE 72-RELATED 9 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 PRINTS Plant peroxidase signature 249 266 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 PRINTS Plant peroxidase signature 233 248 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1427 317 FunFam Peroxidase 158 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1427 HCH-Chr2:55957542 HCH5g0712 HCH-Chr5:5165344 4.50E-106 dispersed
HCH2g1426 HCH-Chr2:55950422 HCH2g1427 HCH-Chr2:55957542 9.10E-115 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1427 K00430 - csv:101212957 435.261