Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1428 ATGTACCAGCATCAGAAGTTAAGGGAAGAACGCCTGTCTTCCGGGGGCAGCTTCTGCAACGAAGTGACTGAGTTGCACGTTGCATCTATAGATTCTCAAGTAGCATCTTCCCATGCAGAGTTAAAAGGTGTCTCTTCCAGAAAAGCCTCCCATGGTTTTGGTAGGAGTCGTGGACTACCATCAAATACTGATGTACATGAATTACTAGACTGTACTGTTTGTATGAACTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGCACGGGTTCAGAATTGCTGCCCTACCTGCCGTCATGAGCTTGGAAATATAAGGTGCCTAGCACTAGAAAAGGTAGCAGAGTCACTCGAGCTCCCTTGCGTATACCAAAATCTTGGTTGCATCGACACTTCCCCATACTACAGCAAGCTCAAACATGAGAAGAACTGTAAATATCGTCCATACAACTGTCCTTATGCTGGAGGTGAATGTTCTGTCACTGGTGACATCCCATACCTGTCTATGCATCTCAAGAATGACCATAAGGTTGATATGCATGATGGATGTACTTTCAGTCACAGATATGTCAAATCTAATCCACAAGAAGTCGAAAACGCTACATGGATGCTGACTGTTTTTAACTGCTTTGGACGACAATTCTGTTTGCACTTTGAAGCATTCCACTTAGGAACAGCACCTGTTTACATGGCTTTCCTCCGATTCATGGGTGACGACGATGACGCAAAACAATTTTCTTACAGTCTGGAAATTGGTGGGAATGGCAGAAAACTCATCTGGCAAGGAATGCCAAGAAGTATCCGCGACAGCCATAGAAAAGTCCGGGACAGTCACGATGGATTAATCATTCAGAGGAACTTAGCGCTCTTCTGCTCTGGAAACGACGGCCAAGAACTAAAACTGAAGGTCACAGGACGAATATGGAGAGTAAGGTGA 960 44.69 MYQHQKLREERLSSGGSFCNEVTELHVASIDSQVASSHAELKGVSSRKASHGFGRSRGLPSNTDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDTSPYYSKLKHEKNCKYRPYNCPYAGGECSVTGDIPYLSMHLKNDHKVDMHDGCTFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFHLGTAPVYMAFLRFMGDDDDAKQFSYSLEIGGNGRKLIWQGMPRSIRDSHRKVRDSHDGLIIQRNLALFCSGNDGQELKLKVTGRIWRVR 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55963619 55965183 + evm.model.ptg000010l.76 HCH2g1428 540653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1428 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 178 IPR013083 -
HCH2g1428 319 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 179 312 IPR008974 GO:0005515(InterPro)
HCH2g1428 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 123 IPR013083 -
HCH2g1428 319 ProSiteProfiles Zinc finger RING-type profile. 71 107 IPR001841 -
HCH2g1428 319 FunFam E3 ubiquitin-protein ligase SINAT3 121 179 - -
HCH2g1428 319 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 71 106 IPR049548 -
HCH2g1428 319 Pfam Sina, TRAF-like domain 215 312 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
HCH2g1428 319 FunFam E3 ubiquitin-protein ligase SINAT5-like 180 312 - -
HCH2g1428 319 SUPERFAMILY TRAF domain-like 124 316 - -
HCH2g1428 319 Pfam Sina, zinc finger 120 195 - -
HCH2g1428 319 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 51 314 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
HCH2g1428 319 SUPERFAMILY RING/U-box 62 113 - -
HCH2g1428 319 ProSiteProfiles Zinc finger SIAH-type profile. 124 184 IPR013010 GO:0008270(InterPro)
HCH2g1428 319 CDD RING-HC_SIAHs 69 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0396 HCH-Chr9:2504397 HCH2g1428 HCH-Chr2:55963619 4.30E-22 transposed
HCH2g1428 HCH-Chr2:55963619 HCH9g1156 HCH-Chr9:16137382 1.30E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1428 K04506 - csv:101213438 582.022