Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1466 ATGAGTAGGTCAGGCATGAGTCAACCCAAAGTCAAGCGTCTTGTCGGAAAGTATGAGATTGGTAGAACAATTGGCGAAGGTACATTTGCAAAGGTGAAGTTTGCCAAAAATTCTGAGACTGGGGATCATGTAGCAATAAAGATCCTTGACAAAGAGAAGGTTCTCAAGCACAAGATGGCTGAACAGATCAAGCGGGAAGTAGCAACAATGAAACTAATAAAGCATCCAAATGTTGTCCAGTTGTATGAGGTGATGGGGAGTAGAACGAAGATATTTATTGTTCTGGAGTTTGTAACTGGCGGAGAGCTTTTTGATAAAATTGTAAATCATGGGCGGATGAGAGAAGATGAGGCACGTAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACCGAGATCTCAAGCCAGAAAATCTTTTGTTAGATTCGTATGGAAACCTTAAAGTTTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTCAAGGACGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATAGAGGCTACGACGGGGCAACTGCAGACTTGTGGTCTTGTGGAGTCATACTCTTTGTACTGCTTGCAGGCTACTTGCCTTTTGATGATTCTAATCTAATGAACTTGTATAAAAAAATATCAGCTGCTGAATTTACCTGTCCCCCATGGCTTTCTTTTGGTGCCATGAAATTGATTACTCGAGTTTTGGATCCCAACCCAATGACTCGTATCACGGTACCTGAAATTTTGGAAGATGAATGGTTTAAAAAAGACTATAAGCCCCCTGTTTTTGAGGAGCACAAGCATGCAAACTTGGATGATGTTGAAGCTGTTTTTAAAGATTCAGAAGAGCACCATGTCATGGAGAAAAAGGAAGAACAACCCACAGCCATGAATGCCTTTGAGTTGATTTCAATGTCGAAAGGACTAAACCTGGCAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGATTTACCTCTAAATGCTCCGCTAATGAAATTGTAAATAAGATTGAAGAAGCTGCCAAGCCTCTTGGTTTTGATGTACAAAAGAAAAACTACAAGCTGAAGCTTGAAAATGTGAAAGCCGGGCGCAAGGGAAATCTTAATGTTGCGACGGAGATTTTGCAAGTGGCGCCTTCAGTTCATGTCGTTGAGATGCGAAAAGCGAAGGGGGACACTTTGGAGTTCCACAAGTTCTATAAAAAACTCTCTACCTCCCTGGAGGATGTTGTTTGGAAGACTGAGGAAGACATGCAAGAACCAAAGTGA 1335 41.35 MSRSGMSQPKVKRLVGKYEIGRTIGEGTFAKVKFAKNSETGDHVAIKILDKEKVLKHKMAEQIKREVATMKLIKHPNVVQLYEVMGSRTKIFIVLEFVTGGELFDKIVNHGRMREDEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDSYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLMNLYKKISAAEFTCPPWLSFGAMKLITRVLDPNPMTRITVPEILEDEWFKKDYKPPVFEEHKHANLDDVEAVFKDSEEHHVMEKKEEQPTAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKLKLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKKLSTSLEDVVWKTEEDMQEPK 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 56197623 56203890 + evm.model.ptg000010l.38 HCH2g1466 540691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1466 444 Pfam Protein kinase domain 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1466 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g1466 444 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165(InterPro)
HCH2g1466 444 SMART serkin_6 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1466 444 CDD CIPK_C 317 431 - -
HCH2g1466 444 Pfam NAF domain 313 372 IPR004041 GO:0007165(InterPro)
HCH2g1466 444 CDD STKc_SnRK3 17 272 - -
HCH2g1466 444 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1466 444 Gene3D Transferase(Phosphotransferase) domain 1 98 303 - -
HCH2g1466 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 423 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH2g1466 444 FunFam Non-specific serine/threonine protein kinase 11 314 - -
HCH2g1466 444 SUPERFAMILY Protein kinase-like (PK-like) 14 291 IPR011009 -
HCH2g1466 444 FunFam Non-specific serine/threonine protein kinase 9 97 - -
HCH2g1466 444 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
HCH2g1466 444 Gene3D Kinase associated domain 1, KA1 310 435 - -
HCH2g1466 444 Gene3D Phosphorylase Kinase; domain 1 7 97 - -
HCH2g1466 444 FunFam Non-specific serine/threonine protein kinase 310 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1002 HCH-Chr13:24972969 HCH2g1466 HCH-Chr2:56197623 6.60E-46 dispersed
HCH14g1094 HCH-Chr14:37877312 HCH2g1466 HCH-Chr2:56197623 2.30E-175 dispersed
HCH2g1466 HCH-Chr2:56197623 HCH3g0829 HCH-Chr3:6240969 5.60E-179 dispersed
HCH9g1300 HCH-Chr9:41016695 HCH2g1466 HCH-Chr2:56197623 4.60E-40 dispersed
HCH6g0516 HCH-Chr6:23477724 HCH2g1466 HCH-Chr2:56197623 2.00E-74 transposed
HCH6g1594 HCH-Chr6:49107869 HCH2g1466 HCH-Chr2:56197623 1.70E-57 transposed
HCH9g0261 HCH-Chr9:1629552 HCH2g1466 HCH-Chr2:56197623 2.60E-71 transposed
HCH11g0501 HCH-Chr11:6020918 HCH2g1466 HCH-Chr2:56197623 1.80E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81363 PF00069 Pkinase 9.10E-72 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1466 - - - 0.0