Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1476 ATGGAAAATTGGATCCGCCCCTCAATATTTGGTATCCATGAGCAGAACCTGATGCAGGTTTGCAGTGAAAGTACGAGAAATAGCACGTTTAAGAATGGAAAGGTCAGTCGGAAGGCTTTCGCCCTGCAGGACAAGCTTTGGTCCATATATGCAGTGGGTGATACTGTACCCATTCCATTCTTGAGAGCTACTGATATATCCCCATTCATGCAACAAGGTAATAGTGGACCAGTCGCAGTGGAAGTGCTTCAGGAACTTTTCGCTGGTGACGGACAATCGAAAAAGGGTCGTAGGGGACAGAATGAGATGCCCCTTCCTCCCAGTGTATATCAAAGACCAACTTCAAGCCCGACGCTATTGAACCTTGCGCAGGCTTTAGCTTACCACAGAATGTGTTACGAAGATATGCCGCTTCAGGAGTTGCAGGCGACGCAAGAACAACAAACCATTCAAAATCTTTGTGATACACTTAGAACTATCCTCTGA 486 46.3 MENWIRPSIFGIHEQNLMQVCSESTRNSTFKNGKVSRKAFALQDKLWSIYAVGDTVPIPFLRATDISPFMQQGNSGPVAVEVLQELFAGDGQSKKGRRGQNEMPLPPSVYQRPTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTIL 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 56250575 56251733 - evm.model.ptg000010l.28 HCH2g1476 540701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1476 161 MobiDBLite consensus disorder prediction 91 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1476 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1476 HCH-Chr2:56250575 HCH2g1479 HCH-Chr2:56255265 6.40E-16 proximal
HCH10g0767 HCH-Chr10:7343252 HCH2g1476 HCH-Chr2:56250575 5.20E-15 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g1055 . 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 62.5 1.4e-224 776.2
HCH1g0869 . 264 529 MAP Kinase Kinase Kinase Kinase AT1G53165 51.3 1.1e-67 255.0
HCH2g1479 . 50 315 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 3.4e-66 250.0
HCH10g0768 . 39 185 MAP Kinase Kinase Kinase Kinase AT1G53165 56.1 1.6e-39 161.4
HCH12g1055 . 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 65.0 3.3e-234 808.1
HCH1g0869 . 264 529 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 3.7e-68 256.5
HCH2g1479 . 50 315 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 1.2e-66 251.5
HCH10g0768 . 39 185 MAP Kinase Kinase Kinase Kinase AT3G15220 56.1 7.2e-40 162.5
HCH1g0869 . 4 852 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 2.6e-230 795.4
HCH2g1479 . 1 512 MAP Kinase Kinase Kinase Kinase AT1G69220 59.2 7.9e-155 544.7
HCH12g1055 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 5.1e-69 259.6
HCH2g1476 . 28 161 MAP Kinase Kinase Kinase Kinase AT1G69220 76.6 1.0e-53 208.8
HCH13g0822 . 1 669 MAP Kinase Kinase Kinase Kinase AT5G14720 64.6 1.9e-250 862.1
HCH9g0143 . 27 628 MAP Kinase Kinase Kinase Kinase AT5G14720 54.4 7.5e-183 637.5
HCH6g1181 . 8 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.6 5.8e-250 860.5
HCH6g1181 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 65.6 4.7e-249 857.4
HCH9g0143 . 22 371 MAP Kinase Kinase Kinase Kinase AT1G70430 65.4 4.5e-131 465.3
HCH6g0302 . 13 371 MAP Kinase Kinase Kinase Kinase AT1G70430 60.7 1.8e-127 453.4
HCH6g1181 . 5 386 MAP Kinase Kinase Kinase Kinase AT1G70430 55.8 3.6e-120 429.1
HCH6g0302 . 11 680 MAP Kinase Kinase Kinase Kinase AT1G79640 57.0 2.3e-205 712.2
HCH9g0143 . 26 373 MAP Kinase Kinase Kinase Kinase AT1G79640 67.5 4.4e-143 505.4
HCH13g0822 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.3 4.6e-102 368.6
HCH9g0143 . 23 347 MAP Kinase Kinase Kinase Kinase AT1G23700 54.6 9.7e-92 334.3
HCH6g0302 . 15 333 MAP Kinase Kinase Kinase Kinase AT1G23700 52.8 3.6e-86 315.8
HCH6g1181 . 17 311 MAP Kinase Kinase Kinase Kinase AT1G23700 50.7 2.2e-75 280.0
HCH7g1302 . 15 453 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 5.1e-141 498.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47