Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1479 ATGGATAGGGCGGTGGCGAGTATGCAGGGGATGGGGGAGTTGTGGTTTGGTGGGAGGCAGAGGAAAGGGAATGGATCCCCGTTGAGTGAGGAAGGTGGTGGACGGCGAAATAAGGTGTCTTCGAGTTCGATTCCAGAGAGTATTACTAGAGAAGATCCTAATTCTAAGTATGAATTGCTCAATGAACTTGGTAAAGGATCTTATGGGGCTGTTTATAAAGCTCGGGATATTAAAACCTCGGAGTTGGTCGCTATTAAGGTCATATCTTTGAGTGAGGGGGAGGAAGGATACGAAGAAATTCGTGGTGAGATTGAGATGTTGCAGCAATGCAGTCATCCGAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAGGAGTATCTTTGGATAGTAATGGAGTACTGTGGGGGTGGAAGTGTTGCTGACTTGATGAATGTCACTGAGGAATCTTTAGAGGAATATCAAATAGCATATATCTGTAGGGAGGCTTTAAAGGGACTTACTTATCTGCATTCAATATTCAAGGTTCATAGGGATATCAAGGGTGGTAATATTTTGTTAACTGAACAAGGAGATGTCAAGTTGGGAGATTTTGGAGTCGCTGCCCAGCTAACTAGGACCATGTCGAAGCGCAATACGTTCATCGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAAGAAAGTCGATATGATGGAAAGGTGGATGTGTGCGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGACTTCCTCCAAGATCGGCAGTGCACCCGATGAGGGTTTTATTCATGATATCCATAGAACCATCTCCAATGCTTGAAGACAAAGAGAAATGGTCTTTATTGTTCCACGATTTCGTTGCGAAGTGTCTAACAAAAGATCCACGTTCGCGTCCTGCGGCTCCTGAGATGTTGAAGCACAAATTTATTGAAAAATGCAGATATGGGGCATCAGCAATGTTGCCTAAGATTGAAAAAGCTAGGAAAGTCAGGACTTTAATGGCCCAGCAAGCACATAATATTGCTCCAGCTGCATCAGAAGATGGTACATTGGTAGCGGTAAAGGTAAATCAAGATTATGGAGATACTGTTCCTTCAAAAACTTCGAATATTGGACTTCAGGTGGCAAATGAAGTGCGAAGAGGTACCATTTTGAGGAAGCAGGAGGTATCAGGAGTGGAACATGTGGCAGAAGGTACTTTTGGCACTGTAATCATCCATGATGGAGATGAGAATGATAAGGTGGCTTCTCAGCTGGATATTGATAATGCTGAACCTTCAACTGCTTCTATACACGACGAGAGTGCTTCCATTAGTGGAAGTGGAGTCCAAATTGTTGACCCCAGGACCAGTGTGAATCGAACTGGAGATATTTCGGATGGAAAATTGGATCCGACCACTAGTCTTGCATCTTCACCCTCAATTTTTGGTATCCATGAGCAGAACCTGATGCAGGTTTGCAGTGAAAGTACTAGAAATAGCACGTTTAAGAATGGAAAGGTCAGTCGGAAGGCTTTCACCCTGCAGGACAAGTGCCAATTTCGTATGGAGAATCAGAGCAGCGGTAGTATTATTAACCATGACAATGGCACCAATAATAATAACCATTTGAAAGCTGAAGAATCAATTGCAGGAAACTACGAGGCTCTTAAAGCTCTCAGAGAGCTCATTCTTTTCCCTCTCTTATACTCTCTCGAAGCTCATCAAATCGGTCTCAAATGGCCTCGAGGTTTGCTTTTGTACGGTCCCCCTGGCACTGGCAAGACAAGCTTAGTTCGTGCAGTTGTTCAAGAATGTGATGCTCATTTAATCATTATTAGTCCACATACAGTTCAAAGAGCACATGCTGGAGAAAGTGAAAAAGTTTTGCGTGAGGCTTTTTCCAAGGCATCATCTCATACAGAAACAGGAAAGCCATCAGTTATCTTTATAGATGAAATTGACGCACTTTGTCCTCATCGTGATTCTAGAAGAGAGCAAGACGTTCGTATAACGTCTCAACTTTCCACTTTGATGGACTCCAATAAGAAGCTATCATCCTCTAGACCACAAGTCGTTGTAGTCGCGTCAACCAACAGAGTTGATGCAATCGATCCTGCACTTAGAAGGTCGGGGCGTTTTGACGCTGAAATTGAAGTTTCAGCGCCTACTGAGGATGAACGTTATCAAATTCTAAGGCTATACACAAGGAAGGTTCTGTTGGATCCAAAAATTGACTTAAGAGCTATAGCTAAATCCTGCAACGGATTTGTTGGAGCTGATTTGGAAGCTTTATGTCGTGAGGCTGCAATGGCTGCACTGCAGAGGTCCTCAGATACAAATGAAAATGTTATTCTCAGTCTGACTACAGAAGACTGGAAGCACGCAAAATCTGTGGTTGGCCCAAGCATGACAAGAGGGGTCACTGTGGAAGTTCCAAATGTGACCTGGGATGACATTGGAGGACTTCAAGATTTGAAAAAAAAGCTCCAGCAATCAGTTGAGTGGCCTATTAAACATTCTGATGCTTTCTCAAAGCTGGGTATATCACCTACACGTGGAATTCTTCTGTACGGGCCTCCAGGTTGCTCAAAAACGACCGTTGCAAAAGCAGCAGCCCATGCTGCTCAAGCATCCTTTTTTTCCCTCAGTGGTGCAGAGATGTACTCTATGTATGTTGGAGAGGGAGAGGCTCTCTTGCGTAATACATTTCGAAAAGCTCGACTTGTTGCACCAAGCATAATATTTTTTGACGAGGCTGATGTTGTTGCTGCCAAAAGAGGTGGGAGTTCAGGCAACGTTGCAGTTGGAGAGAGGCTTCTAACTACTCTGCTGACTGAAATGGACGGTCTAGAAGAAGCTAAAGGAATACTTGTTTTAGCTGCTACAAACCGTCCTCATGCTATTGATGCTGCACTTATGCGACCAGGACGGTTTGACTTGGTGCTTTATGTACCTCCACCAGACTTAGAAGCTCGGTACGAGATACTCCGTGTGCATACTCGGACGATGAAGATTGGAAATGACGTTGATTTCAAAAGAATAGCGGAGGATACAGAGCTCTTCACAGGAGCTGAACTGGAGGGCCTATGTCGAGAAGCTGGAATTGTAGCTTTAAGAGAAGATATAACTACTAGTGTTGTGTGTGGTCGCCATTTCCAGACGGTAAAAGATGCTTTAAAACCAGCTTTAACCTCGGCAGAGATCGATTCATACTCGGCTGTTGTGATGCCCCATTCTGGTATGCCTTCTCGACGTTTTGATTATAGCTCCAAAAATAAGAGCAGTAGCAGAAAGAGTATGATGAGTTCTCAGTCTTTATTTAAATTAGGCTTTGTTAGTTATTTTTTTCTTCTTGTCATATGTTTTCTCTTTGTGAAAGATCAAATCAAACACCAACTGCCCTCTACCTAG 3396 43.7 MDRAVASMQGMGELWFGGRQRKGNGSPLSEEGGGRRNKVSSSSIPESITREDPNSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLSEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEESLEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVCALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPSPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAAPEMLKHKFIEKCRYGASAMLPKIEKARKVRTLMAQQAHNIAPAASEDGTLVAVKVNQDYGDTVPSKTSNIGLQVANEVRRGTILRKQEVSGVEHVAEGTFGTVIIHDGDENDKVASQLDIDNAEPSTASIHDESASISGSGVQIVDPRTSVNRTGDISDGKLDPTTSLASSPSIFGIHEQNLMQVCSESTRNSTFKNGKVSRKAFTLQDKCQFRMENQSSGSIINHDNGTNNNNHLKAEESIAGNYEALKALRELILFPLLYSLEAHQIGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIIISPHTVQRAHAGESEKVLREAFSKASSHTETGKPSVIFIDEIDALCPHRDSRREQDVRITSQLSTLMDSNKKLSSSRPQVVVVASTNRVDAIDPALRRSGRFDAEIEVSAPTEDERYQILRLYTRKVLLDPKIDLRAIAKSCNGFVGADLEALCREAAMAALQRSSDTNENVILSLTTEDWKHAKSVVGPSMTRGVTVEVPNVTWDDIGGLQDLKKKLQQSVEWPIKHSDAFSKLGISPTRGILLYGPPGCSKTTVAKAAAHAAQASFFSLSGAEMYSMYVGEGEALLRNTFRKARLVAPSIIFFDEADVVAAKRGGSSGNVAVGERLLTTLLTEMDGLEEAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARYEILRVHTRTMKIGNDVDFKRIAEDTELFTGAELEGLCREAGIVALREDITTSVVCGRHFQTVKDALKPALTSAEIDSYSAVVMPHSGMPSRRFDYSSKNKSSSRKSMMSSQSLFKLGFVSYFFLLVICFLFVKDQIKHQLPST 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 56255265 56268266 - evm.model.ptg000010l.25 HCH2g1479 540704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1479 1131 SMART AAA_5 845 983 IPR003593 GO:0016887(InterPro)
HCH2g1479 1131 SMART AAA_5 575 718 IPR003593 GO:0016887(InterPro)
HCH2g1479 1131 Pfam AAA+ lid domain 739 775 IPR041569 -
HCH2g1479 1131 Pfam AAA+ lid domain 1003 1047 IPR041569 -
HCH2g1479 1131 CDD RecA-like_CDC48_r2-like 820 979 - -
HCH2g1479 1131 CDD RecA-like_CDC48_NLV2_r1-like 543 714 - -
HCH2g1479 1131 FunFam Cell division control protein 48 homolog B 536 715 - -
HCH2g1479 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 542 795 IPR027417 -
HCH2g1479 1131 Gene3D - 808 981 IPR027417 -
HCH2g1479 1131 Gene3D - 530 715 IPR027417 -
HCH2g1479 1131 ProSitePatterns AAA-protein family signature. 951 969 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH2g1479 1131 FunFam serine/threonine-protein kinase dst1 isoform X1 54 344 - -
HCH2g1479 1131 FunFam Cell division control protein 48-B-like protein 799 982 - -
HCH2g1479 1131 MobiDBLite consensus disorder prediction 35 50 - -
HCH2g1479 1131 Gene3D - 982 1040 - -
HCH2g1479 1131 SMART serkin_6 57 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1479 1131 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524(InterPro)
HCH2g1479 1131 Pfam Protein kinase domain 57 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1479 1131 Gene3D Transferase(Phosphotransferase) domain 1 53 349 - -
HCH2g1479 1131 Pfam ATPase family associated with various cellular activities (AAA) 579 715 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH2g1479 1131 Pfam ATPase family associated with various cellular activities (AAA) 849 980 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH2g1479 1131 MobiDBLite consensus disorder prediction 428 467 - -
HCH2g1479 1131 MobiDBLite consensus disorder prediction 15 52 - -
HCH2g1479 1131 FunFam spermatogenesis-associated protein 5-like protein 1 982 1068 - -
HCH2g1479 1131 SUPERFAMILY Protein kinase-like (PK-like) 54 312 IPR011009 -
HCH2g1479 1131 FunFam Aurora kinase A 49 138 - -
HCH2g1479 1131 PANTHER AAA-FAMILY ATPASE 421 1068 IPR050168 GO:0016887(PANTHER)
HCH2g1479 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 807 1041 IPR027417 -
HCH2g1479 1131 ProSiteProfiles Protein kinase domain profile. 57 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1479 1131 Gene3D - 717 807 - -
HCH2g1479 1131 CDD STKc_MAP4K3_like 56 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0767 HCH-Chr10:7343252 HCH2g1479 HCH-Chr2:56255265 0.00E+00 dispersed
HCH1g0869 HCH-Chr1:57240163 HCH2g1479 HCH-Chr2:56255265 1.10E-276 dispersed
HCH2g1479 HCH-Chr2:56255265 HCH9g0568 HCH-Chr9:3732070 7.00E-117 dispersed
HCH3g0372 HCH-Chr3:2358516 HCH2g1479 HCH-Chr2:56255265 1.70E-13 dispersed
HCH2g1476 HCH-Chr2:56250575 HCH2g1479 HCH-Chr2:56255265 6.40E-16 proximal
HCH2g1477 HCH-Chr2:56251755 HCH2g1479 HCH-Chr2:56255265 7.40E-63 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81366 PF00069 Pkinase 5.70E-66 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1479 - - - 0.0