Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1479 ATGGATAGGGCGGTGGCGAGTATGCAGGGGATGGGGGAGTTGTGGTTTGGTGGGAGGCAGAGGAAAGGGAATGGATCCCCGTTGAGTGAGGAAGGTGGTGGACGGCGAAATAAGGTGTCTTCGAGTTCGATTCCAGAGAGTATTACTAGAGAAGATCCTAATTCTAAGTATGAATTGCTCAATGAACTTGGTAAAGGATCTTATGGGGCTGTTTATAAAGCTCGGGATATTAAAACCTCGGAGTTGGTCGCTATTAAGGTCATATCTTTGAGTGAGGGGGAGGAAGGATACGAAGAAATTCGTGGTGAGATTGAGATGTTGCAGCAATGCAGTCATCCGAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAGGAGTATCTTTGGATAGTAATGGAGTACTGTGGGGGTGGAAGTGTTGCTGACTTGATGAATGTCACTGAGGAATCTTTAGAGGAATATCAAATAGCATATATCTGTAGGGAGGCTTTAAAGGGACTTACTTATCTGCATTCAATATTCAAGGTTCATAGGGATATCAAGGGTGGTAATATTTTGTTAACTGAACAAGGAGATGTCAAGTTGGGAGATTTTGGAGTCGCTGCCCAGCTAACTAGGACCATGTCGAAGCGCAATACGTTCATCGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAAGAAAGTCGATATGATGGAAAGGTGGATGTGTGCGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGACTTCCTCCAAGATCGGCAGTGCACCCGATGAGGGTTTTATTCATGATATCCATAGAACCATCTCCAATGCTTGAAGACAAAGAGAAATGGTCTTTATTGTTCCACGATTTCGTTGCGAAGTGTCTAACAAAAGATCCACGTTCGCGTCCTGCGGCTCCTGAGATGTTGAAGCACAAATTTATTGAAAAATGCAGATATGGGGCATCAGCAATGTTGCCTAAGATTGAAAAAGCTAGGAAAGTCAGGACTTTAATGGCCCAGCAAGCACATAATATTGCTCCAGCTGCATCAGAAGATGGTACATTGGTAGCGGTAAAGGTAAATCAAGATTATGGAGATACTGTTCCTTCAAAAACTTCGAATATTGGACTTCAGGTGGCAAATGAAGTGCGAAGAGGTACCATTTTGAGGAAGCAGGAGGTATCAGGAGTGGAACATGTGGCAGAAGGTACTTTTGGCACTGTAATCATCCATGATGGAGATGAGAATGATAAGGTGGCTTCTCAGCTGGATATTGATAATGCTGAACCTTCAACTGCTTCTATACACGACGAGAGTGCTTCCATTAGTGGAAGTGGAGTCCAAATTGTTGACCCCAGGACCAGTGTGAATCGAACTGGAGATATTTCGGATGGAAAATTGGATCCGACCACTAGTCTTGCATCTTCACCCTCAATTTTTGGTATCCATGAGCAGAACCTGATGCAGGTTTGCAGTGAAAGTACTAGAAATAGCACGTTTAAGAATGGAAAGGTCAGTCGGAAGGCTTTCACCCTGCAGGACAAGTGCCAATTTCGTATGGAGAATCAGAGCAGCGGTAGTATTATTAACCATGACAATGGCACCAATAATAATAACCATTTGAAAGCTGAAGAATCAATTGCAGGAAACTACGAGGCTCTTAAAGCTCTCAGAGAGCTCATTCTTTTCCCTCTCTTATACTCTCTCGAAGCTCATCAAATCGGTCTCAAATGGCCTCGAGGTTTGCTTTTGTACGGTCCCCCTGGCACTGGCAAGACAAGCTTAGTTCGTGCAGTTGTTCAAGAATGTGATGCTCATTTAATCATTATTAGTCCACATACAGTTCAAAGAGCACATGCTGGAGAAAGTGAAAAAGTTTTGCGTGAGGCTTTTTCCAAGGCATCATCTCATACAGAAACAGGAAAGCCATCAGTTATCTTTATAGATGAAATTGACGCACTTTGTCCTCATCGTGATTCTAGAAGAGAGCAAGACGTTCGTATAACGTCTCAACTTTCCACTTTGATGGACTCCAATAAGAAGCTATCATCCTCTAGACCACAAGTCGTTGTAGTCGCGTCAACCAACAGAGTTGATGCAATCGATCCTGCACTTAGAAGGTCGGGGCGTTTTGACGCTGAAATTGAAGTTTCAGCGCCTACTGAGGATGAACGTTATCAAATTCTAAGGCTATACACAAGGAAGGTTCTGTTGGATCCAAAAATTGACTTAAGAGCTATAGCTAAATCCTGCAACGGATTTGTTGGAGCTGATTTGGAAGCTTTATGTCGTGAGGCTGCAATGGCTGCACTGCAGAGGTCCTCAGATACAAATGAAAATGTTATTCTCAGTCTGACTACAGAAGACTGGAAGCACGCAAAATCTGTGGTTGGCCCAAGCATGACAAGAGGGGTCACTGTGGAAGTTCCAAATGTGACCTGGGATGACATTGGAGGACTTCAAGATTTGAAAAAAAAGCTCCAGCAATCAGTTGAGTGGCCTATTAAACATTCTGATGCTTTCTCAAAGCTGGGTATATCACCTACACGTGGAATTCTTCTGTACGGGCCTCCAGGTTGCTCAAAAACGACCGTTGCAAAAGCAGCAGCCCATGCTGCTCAAGCATCCTTTTTTTCCCTCAGTGGTGCAGAGATGTACTCTATGTATGTTGGAGAGGGAGAGGCTCTCTTGCGTAATACATTTCGAAAAGCTCGACTTGTTGCACCAAGCATAATATTTTTTGACGAGGCTGATGTTGTTGCTGCCAAAAGAGGTGGGAGTTCAGGCAACGTTGCAGTTGGAGAGAGGCTTCTAACTACTCTGCTGACTGAAATGGACGGTCTAGAAGAAGCTAAAGGAATACTTGTTTTAGCTGCTACAAACCGTCCTCATGCTATTGATGCTGCACTTATGCGACCAGGACGGTTTGACTTGGTGCTTTATGTACCTCCACCAGACTTAGAAGCTCGGTACGAGATACTCCGTGTGCATACTCGGACGATGAAGATTGGAAATGACGTTGATTTCAAAAGAATAGCGGAGGATACAGAGCTCTTCACAGGAGCTGAACTGGAGGGCCTATGTCGAGAAGCTGGAATTGTAGCTTTAAGAGAAGATATAACTACTAGTGTTGTGTGTGGTCGCCATTTCCAGACGGTAAAAGATGCTTTAAAACCAGCTTTAACCTCGGCAGAGATCGATTCATACTCGGCTGTTGTGATGCCCCATTCTGGTATGCCTTCTCGACGTTTTGATTATAGCTCCAAAAATAAGAGCAGTAGCAGAAAGAGTATGATGAGTTCTCAGTCTTTATTTAAATTAGGCTTTGTTAGTTATTTTTTTCTTCTTGTCATATGTTTTCTCTTTGTGAAAGATCAAATCAAACACCAACTGCCCTCTACCTAG 3396 43.7 MDRAVASMQGMGELWFGGRQRKGNGSPLSEEGGGRRNKVSSSSIPESITREDPNSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLSEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEESLEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVCALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPSPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAAPEMLKHKFIEKCRYGASAMLPKIEKARKVRTLMAQQAHNIAPAASEDGTLVAVKVNQDYGDTVPSKTSNIGLQVANEVRRGTILRKQEVSGVEHVAEGTFGTVIIHDGDENDKVASQLDIDNAEPSTASIHDESASISGSGVQIVDPRTSVNRTGDISDGKLDPTTSLASSPSIFGIHEQNLMQVCSESTRNSTFKNGKVSRKAFTLQDKCQFRMENQSSGSIINHDNGTNNNNHLKAEESIAGNYEALKALRELILFPLLYSLEAHQIGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIIISPHTVQRAHAGESEKVLREAFSKASSHTETGKPSVIFIDEIDALCPHRDSRREQDVRITSQLSTLMDSNKKLSSSRPQVVVVASTNRVDAIDPALRRSGRFDAEIEVSAPTEDERYQILRLYTRKVLLDPKIDLRAIAKSCNGFVGADLEALCREAAMAALQRSSDTNENVILSLTTEDWKHAKSVVGPSMTRGVTVEVPNVTWDDIGGLQDLKKKLQQSVEWPIKHSDAFSKLGISPTRGILLYGPPGCSKTTVAKAAAHAAQASFFSLSGAEMYSMYVGEGEALLRNTFRKARLVAPSIIFFDEADVVAAKRGGSSGNVAVGERLLTTLLTEMDGLEEAKGILVLAATNRPHAIDAALMRPGRFDLVLYVPPPDLEARYEILRVHTRTMKIGNDVDFKRIAEDTELFTGAELEGLCREAGIVALREDITTSVVCGRHFQTVKDALKPALTSAEIDSYSAVVMPHSGMPSRRFDYSSKNKSSSRKSMMSSQSLFKLGFVSYFFLLVICFLFVKDQIKHQLPST 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 56255265 56268266 - evm.model.ptg000010l.25 HCH2g1479 540704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1479 1131 SMART AAA_5 845 983 IPR003593 GO:0016887(InterPro)
HCH2g1479 1131 SMART AAA_5 575 718 IPR003593 GO:0016887(InterPro)
HCH2g1479 1131 Pfam AAA+ lid domain 739 775 IPR041569 -
HCH2g1479 1131 Pfam AAA+ lid domain 1003 1047 IPR041569 -
HCH2g1479 1131 CDD RecA-like_CDC48_r2-like 820 979 - -
HCH2g1479 1131 CDD RecA-like_CDC48_NLV2_r1-like 543 714 - -
HCH2g1479 1131 FunFam Cell division control protein 48 homolog B 536 715 - -
HCH2g1479 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 542 795 IPR027417 -
HCH2g1479 1131 Gene3D - 808 981 IPR027417 -
HCH2g1479 1131 Gene3D - 530 715 IPR027417 -
HCH2g1479 1131 ProSitePatterns AAA-protein family signature. 951 969 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH2g1479 1131 FunFam serine/threonine-protein kinase dst1 isoform X1 54 344 - -
HCH2g1479 1131 FunFam Cell division control protein 48-B-like protein 799 982 - -
HCH2g1479 1131 MobiDBLite consensus disorder prediction 35 50 - -
HCH2g1479 1131 Gene3D - 982 1040 - -
HCH2g1479 1131 SMART serkin_6 57 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1479 1131 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524(InterPro)
HCH2g1479 1131 Pfam Protein kinase domain 57 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1479 1131 Gene3D Transferase(Phosphotransferase) domain 1 53 349 - -
HCH2g1479 1131 Pfam ATPase family associated with various cellular activities (AAA) 579 715 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH2g1479 1131 Pfam ATPase family associated with various cellular activities (AAA) 849 980 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH2g1479 1131 MobiDBLite consensus disorder prediction 428 467 - -
HCH2g1479 1131 MobiDBLite consensus disorder prediction 15 52 - -
HCH2g1479 1131 FunFam spermatogenesis-associated protein 5-like protein 1 982 1068 - -
HCH2g1479 1131 SUPERFAMILY Protein kinase-like (PK-like) 54 312 IPR011009 -
HCH2g1479 1131 FunFam Aurora kinase A 49 138 - -
HCH2g1479 1131 PANTHER AAA-FAMILY ATPASE 421 1068 IPR050168 GO:0016887(PANTHER)
HCH2g1479 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 807 1041 IPR027417 -
HCH2g1479 1131 ProSiteProfiles Protein kinase domain profile. 57 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1479 1131 Gene3D - 717 807 - -
HCH2g1479 1131 CDD STKc_MAP4K3_like 56 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1479 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0767 HCH-Chr10:7343252 HCH2g1479 HCH-Chr2:56255265 0.00E+00 dispersed
HCH1g0869 HCH-Chr1:57240163 HCH2g1479 HCH-Chr2:56255265 1.10E-276 dispersed
HCH2g1479 HCH-Chr2:56255265 HCH9g0568 HCH-Chr9:3732070 7.00E-117 dispersed
HCH3g0372 HCH-Chr3:2358516 HCH2g1479 HCH-Chr2:56255265 1.70E-13 dispersed
HCH2g1476 HCH-Chr2:56250575 HCH2g1479 HCH-Chr2:56255265 6.40E-16 proximal
HCH2g1477 HCH-Chr2:56251755 HCH2g1479 HCH-Chr2:56255265 7.40E-63 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g1055 . 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 62.5 1.4e-224 776.2
HCH1g0869 . 264 529 MAP Kinase Kinase Kinase Kinase AT1G53165 51.3 1.1e-67 255.0
HCH2g1479 . 50 315 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 3.4e-66 250.0
HCH10g0768 . 39 185 MAP Kinase Kinase Kinase Kinase AT1G53165 56.1 1.6e-39 161.4
HCH12g1055 . 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 65.0 3.3e-234 808.1
HCH1g0869 . 264 529 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 3.7e-68 256.5
HCH2g1479 . 50 315 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 1.2e-66 251.5
HCH10g0768 . 39 185 MAP Kinase Kinase Kinase Kinase AT3G15220 56.1 7.2e-40 162.5
HCH1g0869 . 4 852 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 2.6e-230 795.4
HCH2g1479 . 1 512 MAP Kinase Kinase Kinase Kinase AT1G69220 59.2 7.9e-155 544.7
HCH12g1055 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 5.1e-69 259.6
HCH2g1476 . 28 161 MAP Kinase Kinase Kinase Kinase AT1G69220 76.6 1.0e-53 208.8
HCH13g0822 . 1 669 MAP Kinase Kinase Kinase Kinase AT5G14720 64.6 1.9e-250 862.1
HCH9g0143 . 27 628 MAP Kinase Kinase Kinase Kinase AT5G14720 54.4 7.5e-183 637.5
HCH6g1181 . 8 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.6 5.8e-250 860.5
HCH6g1181 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 65.6 4.7e-249 857.4
HCH9g0143 . 22 371 MAP Kinase Kinase Kinase Kinase AT1G70430 65.4 4.5e-131 465.3
HCH6g0302 . 13 371 MAP Kinase Kinase Kinase Kinase AT1G70430 60.7 1.8e-127 453.4
HCH6g1181 . 5 386 MAP Kinase Kinase Kinase Kinase AT1G70430 55.8 3.6e-120 429.1
HCH6g0302 . 11 680 MAP Kinase Kinase Kinase Kinase AT1G79640 57.0 2.3e-205 712.2
HCH9g0143 . 26 373 MAP Kinase Kinase Kinase Kinase AT1G79640 67.5 4.4e-143 505.4
HCH13g0822 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.3 4.6e-102 368.6
HCH9g0143 . 23 347 MAP Kinase Kinase Kinase Kinase AT1G23700 54.6 9.7e-92 334.3
HCH6g0302 . 15 333 MAP Kinase Kinase Kinase Kinase AT1G23700 52.8 3.6e-86 315.8
HCH6g1181 . 17 311 MAP Kinase Kinase Kinase Kinase AT1G23700 50.7 2.2e-75 280.0
HCH7g1302 . 15 453 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 5.1e-141 498.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006264 3 3 1 2 0 1 1 1 1 1 0 1 1 1 1 1 1 1 2 0 1 2 1 1 1 1 1 1 3 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81366 PF00069 Pkinase 5.70E-66 CL0016 HCH PK