Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1496 ATGGGGTTCGATGCTACATTGACCTCCAAATATCATGTTCAACTACTCTCCAGTGTGTTTGCAAGTGAAGAGGAAGCTAATGAAGCCATGGTGTACAGCTACAAACACAGTTTTTCGGGGTTTTCAGCAAAGCTTAATGCAACCCAGGCAATGGACTTATCAAAGATGGAAGAAGTGATATCGGTATTCCAAAGTAAACCACTGCAGTTACACACTACAAGAAGCTGGGACTTCTTAGGTCTTCCCCTTCCCCGAAATATTCCATTTTTCAATGCTCCAAGCATTGGCTTCGGTACTGGCGGTCATGACGTTATTGTTGGCGTCTTCGATTCAGGTGTTTGGCCTGAATCCGAAAGCTTCAAAGCCTCCTATAATGATATTGAAATAGGTCCAATTCCACGGAGTTGGAAGGGACAATGTGTAAAAGCTCACAACTTCGACCCTACCACTGCATGCAATCGTAAGCTCATTGGTGCTCGTTATTATCTCAAAGGCTTTGAAGCACAATTCGGACCACTACAAGTCAACAGTGAGTTTCCATCACCTCGAGACTTTCTAGGTCATGGAACTCATACTGCTTCAATCGCCGTCGGATCCATTGTCCACAATGTCAGTTTCATGGGTTTATTAGGTCAAGGAATTGCTCGTGGTGGTGCACCTAGGGCTAGGTTATCTGTGTACAAAGTATGCTGGGGAAAGGATTTTGAAGGCAAATGCACCGAAGCTGATATTATGGCTGCTTTTGATGATGCTTTGCATGATGGAGTGCATGTAATCTCTGCATCTTTTGGTACAACGCCACCACTGCCTCCATTTTTTGAGTCCAGTTCTGCAATTGGATCATTCCATGCAATGCAAGAGGGAGTTAGTGTAGTTTTCTCAGCAGGAAATGATGGCCCAGATCCCTCCCTCGTTCAGAATGTGTCTCCATGGAGCATCTGCGTAGCCGCTTCATCTATTGATCGAACGTTTCCCACTCAAATAATCATCGACAACCGCATCTCTATCACGGGACAGAGCCTCATTACTATGAACATAATGAAGGCAAAACTGGCAGATGCAATCAACTACTTTATGGACGGAATTTGCGAGCAGAAGAATAGGATAGCAGGTCGTAAATCAGCTGCAGGGAAAGTGGTACTTTGTTTCTCGACCATAGGTCCAGTATCCATTGAGGTTGCACAAGAAGCAGTGAGGATGATCAATGCCTCTGCTTTGGTATTTGCTGCCCCCATCACAATGCTGCAACCTGATGTCGATATCATTCCCACTGTCAGAATTGATATTACTCAAGCAACTAAAATTAAAAATTTTCTTGCTGAGTTGCCCAGACTACCCGCAGTCCAAATAGGAGTTAGCAAATCTGTGATTGGAAAATCGACGGCTCCCACGGTTGCTTACTTCTCTTCAAGAGGACCAAGCTCGATTTCAGCTGATATTCTAAAGCCGGATATAAGTGGCCCAGGAGTGAACATATTGGCAGCATGGCCTCCTGAAACTCCTCCGACAGTGATACCGAATACGGAGAAGGAAAGAGAAGGTCATGAGTCTCATGTAAAATGGAACTTCCAGTCAGGAACTTCAATGTCATGCCCTCACATATCTGGAGTTGTTGCCCTTATAAAATCTGCACATCCGAGTTGGTCACCAGCAGCCATTCGATCTGCGCTCATAACCACAGCCAGCAAGAGAGACAGCAGTGGTGATAGCATCCTAGCTGCAGGTGGATCATACAAAGCAAGTGACCCCTTTGATATTGGTGGTGGGGAAGTGAATCCGGTAAAAGCGATGGATCCGGGGCTGGTTTACGACATAGGAAGCGAAGATTATATTAAGTTTCTATGCAATATTGGGTTAAGAGAGGAGAGGATAAAAATGGTAGTGAATGCTTGGTCAGAAACAAAAGTGAGGTGTGTAGAGACAGAGGGCATAGGGAATCTGAATTATCCATCGATGACAGTAAGGAATGTGAAGGTGTACTCAAGTATAACGATGAAAAGGAGGGTGAGGAATGTAGGAGAGAAGAAAAATGCAATATATTTTGTGAAAGTGGTGAATCCCATTATTGATGATCATCAGGTGAAAATAGTGGTATGGCCGAGGATTCTGATATTCACATGCTTAAGGGAAGAGATAACTTACTACATAAGCGTGAAGGCAGAGAGGAAATATGGAGGAAGAGGAAGATATGATTTTGGAGAGATTGTTTGGTCAGATGGATTCCATAGAGTCTCAAGTCCTCTGGTAGTAAGTGTTGGTCAAGAAGCCTAA 2271 44.17 MGFDATLTSKYHVQLLSSVFASEEEANEAMVYSYKHSFSGFSAKLNATQAMDLSKMEEVISVFQSKPLQLHTTRSWDFLGLPLPRNIPFFNAPSIGFGTGGHDVIVGVFDSGVWPESESFKASYNDIEIGPIPRSWKGQCVKAHNFDPTTACNRKLIGARYYLKGFEAQFGPLQVNSEFPSPRDFLGHGTHTASIAVGSIVHNVSFMGLLGQGIARGGAPRARLSVYKVCWGKDFEGKCTEADIMAAFDDALHDGVHVISASFGTTPPLPPFFESSSAIGSFHAMQEGVSVVFSAGNDGPDPSLVQNVSPWSICVAASSIDRTFPTQIIIDNRISITGQSLITMNIMKAKLADAINYFMDGICEQKNRIAGRKSAAGKVVLCFSTIGPVSIEVAQEAVRMINASALVFAAPITMLQPDVDIIPTVRIDITQATKIKNFLAELPRLPAVQIGVSKSVIGKSTAPTVAYFSSRGPSSISADILKPDISGPGVNILAAWPPETPPTVIPNTEKEREGHESHVKWNFQSGTSMSCPHISGVVALIKSAHPSWSPAAIRSALITTASKRDSSGDSILAAGGSYKASDPFDIGGGEVNPVKAMDPGLVYDIGSEDYIKFLCNIGLREERIKMVVNAWSETKVRCVETEGIGNLNYPSMTVRNVKVYSSITMKRRVRNVGEKKNAIYFVKVVNPIIDDHQVKIVVWPRILIFTCLREEITYYISVKAERKYGGRGRYDFGEIVWSDGFHRVSSPLVVSVGQEA 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 56340328 56343287 + evm.model.ptg000010l.8 HCH2g1496 540721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1496 756 SUPERFAMILY Subtilisin-like 70 601 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH2g1496 756 Gene3D Peptidase S8/S53 domain 103 610 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH2g1496 756 PRINTS Subtilisin serine protease family (S8) signature 101 120 IPR015500 -
HCH2g1496 756 PRINTS Subtilisin serine protease family (S8) signature 184 197 IPR015500 -
HCH2g1496 756 PRINTS Subtilisin serine protease family (S8) signature 525 541 IPR015500 -
HCH2g1496 756 Gene3D - 321 457 - -
HCH2g1496 756 FunFam Subtilisin-like protease SBT1.5 103 371 - -
HCH2g1496 756 Gene3D - 614 753 - -
HCH2g1496 756 ProSiteProfiles Serine proteases, subtilase domain profile. 75 597 - -
HCH2g1496 756 Pfam Fibronectin type-III domain 646 750 IPR041469 -
HCH2g1496 756 Pfam Subtilase family 101 566 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
HCH2g1496 756 CDD PA_subtilisin_like 328 441 - -
HCH2g1496 756 ProSitePatterns Serine proteases, subtilase family, serine active site. 526 536 IPR023828 -
HCH2g1496 756 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 3 71 IPR037045 -
HCH2g1496 756 Pfam Peptidase inhibitor I9 11 71 IPR010259 -
HCH2g1496 756 CDD Peptidases_S8_3 68 562 IPR034197 -
HCH2g1496 756 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 18 748 IPR045051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1496 HCH-Chr2:56340328 HCH7g0364 HCH-Chr7:2629960 3.00E-132 dispersed
HCH2g1496 HCH-Chr2:56340328 HCH6g0900 HCH-Chr6:43769229 5.50E-134 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1496 - - - 0.0