Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0004 ATGGTCTTCAAGGGCAGGTTCTTCTCCTCCTCCAAGAAGTCCGACTCTTCCAGCCCTGACGGATCCAGTCCCCGATTTCTTCCTTCTAATTCACCTACTTCTACTTCCGACAAGAAGAAGACCAAATCCAAAGATGCTAAACGGAAAGACACTCCTCCTCAAATGCCGATCGAGACCCATACACCCCCCAAACCCACTCTTGTCAAGGATGTTGTCTCCTCTTCTTCCTCGGTTTCTCCTATTCTTGCATCCTCTCTTGGACTTAATAGGATTAAGACCAGATCAGGTCCATTGCCACAGGAGACTTTTTATAAACCCTCATTGGGTTCCAGTCATCTTTCCAAGAACTCTGCTGCTTCCCCTTCCTCCACTTCCCTCACCAACAATGACACTAATCATCCCAAAACCATGCCTTTTCCTTTTCCTTTTCAGGACACTCTTACTACCAACTCCTCCCACAACATCACTACTCCCACTCCAATTTCTCTTCAACAACCACAATCTCGCTTACAGAATCTCCCATCAACCTCTGAACCAGGACGCTATGAATCATCATGGGGATGTCCTGAAGGATCAATAAATTTAGATTTTTGTACACCAGAGTCTTCATATGATTGTGAAAATCCAAAGGAGTCTGAATCTCCTCGTTTTCAAGCTATACTCCGGGTCACAAGTGCTCCTCGGCGGAAGTATCCTGCTGATATCAAAAGCTTTTCCCATGAACTAAATTCAAAAGGTGTACGACCTTTCCCACTTTGGAAGTCACGGCGCTTAAATAATTTGGAGGAAGTTTTAGTTATGATACGGGCAAAATTCGACAAGGCAAAAGAAGAAGTAAATTCTGATCTGGCCATTTTTGCAGCTGATCTGGTTGGTGTTCTTGAAAAAAATGTCGACACTCATCCAGAGGGTCAAGAGATAATTGAAGACTTGCTGATTTTAGCTAGAAGCTGTGCAATGATGTCTCCTGGTGAATTCTGGCTTCAGTGTGAAAGCATTGTTCAGGAATTGGATGATAGACGCCAAGAACTCCCACCCGGCATGCTGAAACAGCTTCATACTCGAATGCTTTTCATTCTCACTAGATGTACAAGGTTGTTACAGTTCCATAAGGAAAGTGGGTTGGCTGAAGATGAAAATGTTTTTCAGCTACGTCAGTCACGAAATCTGCATCCTGCTGATAAACGCATACCTCCAGCTGGGGGAAGAGAAATGAAAAGTTCTACTGCTGCCAAGGCTTCTAAGACATCTTCGTCTAGGAAATCCTACAGTCAGGAGCAGCGTGCCTTGAATTGGAGCAGAGAACATGATATAATGTCAGGGTATAATATCTCACCATCTCCTGATGATACTTCAAAGAACTTGGCATCTCCTACTGGCAGAGACCGAATGGCTTCTTGGAAAAAATTGCCTTCTCCAGCGGTAAAAGGCACGAAAGAACCTACTTTAAAGGAGCAGGGTGATAGTAAGTTTAAACCTTTGAACATATCAAAGAGCACTGGTGTATCTGAAAATGATTTGGTTGCTGCGAAAGTTCAGGAGCTTCCTCTGCCTAGAGATTCTCAGGACCGACCTTCAAAGCACCAACATAAACCTTCCTGGGGTTGGGGTGATCAACCAACTGCATCTGATGAGAGTTCAATTATTTGTCGTATTTGTGAAGAAGAGATTCCCACTGCAAATGTGGAAGACCATTCAAGAATTTGTGCAGTTGCTGATAGATGTGATCAAAAGGGTATAAGTGTTAATGAACGCCTACTCAGAATTGCTGAAACTCTAGAGAAGATGATAGAGTCCTTCACGCAAAAGGATTCTCAACATGTAGGAAGTCCAGATGTTGCCAAAGTCTCAAATTCTAGTGTAACTGAAGAGTCTGATTTCTCCCCAAAACATAGTGATTGGTCTCGCAGAGGCTCAGAGGACATGCTCGATTGCTTTCCCGAAAATGATAATTCTGTCTTTATGGATGACTTAAAAGGTTTACCTTCCATGTCGTGTAAAACTCGTTTTGGTCCGAAGTCGGATCAGGGTATGACAACATCATCTGCTGGTAGCATGACTCCTAGATCTCCATTATTAACACCAAGAACCAGTCAGTTTGACTTGTTCTTGGCAGGGAAAGGTGCTTACTATGAGCATGATGATCTTACTCAGATTAATGATCTTGCTGATATTGCGCGCTGTACGGCTAATACACCTCTGGGCGATGATTGCTCGATGCAATATCTGTTAACGTGCCTTGAAGATTTGAGAGTTGTCATTAATCGCAGGAAGTTTAATGCATTGACAGTTGAAACTTTTGGGACACGTATTGAGAAGTTAATTCGGGAGAAATATTTGCAGCTTTGTGAACTGGTCGATGATGAAAAAATTGACATAACAAGCACTATTATTGATGAAGATGCTCCTCTTGAAGATGATGTGGTTCGTAGCTTAAGAACAAGCCCTATCCATTCTTCTAAAGACCGTACCTCAATAGATGACTTTGAGATTATAAAACCGATCAGTCGGGGTGCATTTGGTCGGGTTTTCTTGGCTAAGAAGAGAACAACAGGGGACCTTTTTGCAATTAAGGTTTTGAAGAAGGCTGATATGATTCGAAAGAATGCTGTTGAAAGTATTTTGGCAGAACGTGATATTTTAATTTCAGTGCGCAATCCTTTTGTGGTTCGCTTTTTCTACTCTTTTACTTGTCGTGATAATTTGTACCTCGTGATGGAGTATTTAAATGGAGGGGACCTTTACTCCTTATTGAGAAATTTAGGTTGCTTAGATGAAGAGGTTGCTCGTGTATATATTGCAGAAGTTGTGCTTGCATTGGAGTATTTACATTCACTTGGGGTAGTACATCGTGATTTAAAGCCTGATAATTTATTAATAGCACATGATGGCCATATTAAGCTGACAGATTTTGGGCTTTCAAAAGTTGGTCTTATCAACAGCACTGATGATTTATCTGGACCAGCAGTTAGTGGGACCAATCTTCTTGGGTATGATGAATCTACAATATCTGCTTCTGAGCATCAACAAGAAAGACGGAAGAAGCGTTCGGCTGTTGGCACACCAGACTATTTGGCACCAGAGATACTTTTGGGAACTGGACATGGTGCCACAGCTGATTGGTGGTCTGTTGGAATCATTTTATTTGAACTGATTGTCGGCATTCCACCCTTCAATGCAGAGCATCCCCAGATGATATTTGATAACATTCTCAATCGTAAGATCCCTTGGCCTCATATACCTGAAGAAATGAGCCCCGATGCCCAAGATTTAGTTGATCGATTATTGACGGAAGATCCTCATCAACGACTTGGAGCTAGAGGTGCATCAGAGGTGAAGGAGCATACGTTCTTTAAAGATATTAACTGGGACACGCTTGCTAGGCAAAAGGCTGCATTTGTTCCAGCATCTGAAAGTGCTCTTGATACCAGCTACTTTACAAGTCGCTACTCATGGAATCACTCGGATGATCATGTCTATCCACCCAGTGAGCTTGAGGATTCTAGTGATGCTGACAGCTTAAGTGGTAGCAGTAGTTTGAGCAATCGTCAAGATGAAGTGGGAGATGAATGTAGGGGCCTTACAGATTTTGAGCCTGGTTCCTCTGTTAATTACTCGTTTAGTAATTTCTCTTTCAAGAATCTCTCCCAGCTTGCGTCAATCAACTACGATCTGCTTTCTAAGGGTTGGAAGGATGATCCTCCAAATCATGATGCATAA 3720 42.45 MVFKGRFFSSSKKSDSSSPDGSSPRFLPSNSPTSTSDKKKTKSKDAKRKDTPPQMPIETHTPPKPTLVKDVVSSSSSVSPILASSLGLNRIKTRSGPLPQETFYKPSLGSSHLSKNSAASPSSTSLTNNDTNHPKTMPFPFPFQDTLTTNSSHNITTPTPISLQQPQSRLQNLPSTSEPGRYESSWGCPEGSINLDFCTPESSYDCENPKESESPRFQAILRVTSAPRRKYPADIKSFSHELNSKGVRPFPLWKSRRLNNLEEVLVMIRAKFDKAKEEVNSDLAIFAADLVGVLEKNVDTHPEGQEIIEDLLILARSCAMMSPGEFWLQCESIVQELDDRRQELPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDENVFQLRQSRNLHPADKRIPPAGGREMKSSTAAKASKTSSSRKSYSQEQRALNWSREHDIMSGYNISPSPDDTSKNLASPTGRDRMASWKKLPSPAVKGTKEPTLKEQGDSKFKPLNISKSTGVSENDLVAAKVQELPLPRDSQDRPSKHQHKPSWGWGDQPTASDESSIICRICEEEIPTANVEDHSRICAVADRCDQKGISVNERLLRIAETLEKMIESFTQKDSQHVGSPDVAKVSNSSVTEESDFSPKHSDWSRRGSEDMLDCFPENDNSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQFDLFLAGKGAYYEHDDLTQINDLADIARCTANTPLGDDCSMQYLLTCLEDLRVVINRRKFNALTVETFGTRIEKLIREKYLQLCELVDDEKIDITSTIIDEDAPLEDDVVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRDNLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTNLLGYDESTISASEHQQERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILFELIVGIPPFNAEHPQMIFDNILNRKIPWPHIPEEMSPDAQDLVDRLLTEDPHQRLGARGASEVKEHTFFKDINWDTLARQKAAFVPASESALDTSYFTSRYSWNHSDDHVYPPSELEDSSDADSLSGSSSLSNRQDEVGDECRGLTDFEPGSSVNYSFSNFSFKNLSQLASINYDLLSKGWKDDPPNHDA 1239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 57801 79158 - evm.model.ptg000005l.1513 HCH3g0004 540732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0004 1239 PANTHER SERINE/THREONINE-PROTEIN KINASE 536 1214 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
HCH3g0004 1239 ProSiteProfiles AGC-kinase C-terminal domain profile. 1119 1222 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0004 1239 MobiDBLite consensus disorder prediction 37 54 - -
HCH3g0004 1239 MobiDBLite consensus disorder prediction 142 182 - -
HCH3g0004 1239 SMART serkin_6 829 1118 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0004 1239 MobiDBLite consensus disorder prediction 1160 1195 - -
HCH3g0004 1239 MobiDBLite consensus disorder prediction 438 459 - -
HCH3g0004 1239 MobiDBLite consensus disorder prediction 386 498 - -
HCH3g0004 1239 MobiDBLite consensus disorder prediction 517 531 - -
HCH3g0004 1239 ProSiteProfiles Protein kinase domain profile. 829 1118 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0004 1239 MobiDBLite consensus disorder prediction 104 135 - -
HCH3g0004 1239 ProSitePatterns Serine/Threonine protein kinases active-site signature. 948 960 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0004 1239 MobiDBLite consensus disorder prediction 9 36 - -
HCH3g0004 1239 Pfam Protein kinase domain 830 1118 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0004 1239 MobiDBLite consensus disorder prediction 515 542 - -
HCH3g0004 1239 Coils Coil 258 278 - -
HCH3g0004 1239 MobiDBLite consensus disorder prediction 1 74 - -
HCH3g0004 1239 MobiDBLite consensus disorder prediction 601 635 - -
HCH3g0004 1239 MobiDBLite consensus disorder prediction 602 625 - -
HCH3g0004 1239 Gene3D Phosphorylase Kinase; domain 1 827 1147 - -
HCH3g0004 1239 Coils Coil 583 603 - -
HCH3g0004 1239 FunFam probable serine/threonine protein kinase IREH1 827 916 - -
HCH3g0004 1239 Gene3D Transferase(Phosphotransferase) domain 1 913 1136 - -
HCH3g0004 1239 MobiDBLite consensus disorder prediction 1168 1184 - -
HCH3g0004 1239 SUPERFAMILY Protein kinase-like (PK-like) 826 1165 IPR011009 -
HCH3g0004 1239 CDD STKc_MAST_like 835 1123 - -
HCH3g0004 1239 MobiDBLite consensus disorder prediction 91 185 - -
HCH3g0004 1239 MobiDBLite consensus disorder prediction 409 429 - -
HCH3g0004 1239 MobiDBLite consensus disorder prediction 669 691 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0486 HCH-Chr12:2843049 HCH3g0004 HCH-Chr3:57801 1.30E-65 dispersed
HCH3g0004 HCH-Chr3:57801 HCH5g0741 HCH-Chr5:5399767 0.00E+00 dispersed
HCH8g0724 HCH-Chr8:43940579 HCH3g0004 HCH-Chr3:57801 1.70E-24 dispersed
HCH9g1115 HCH-Chr9:13874943 HCH3g0004 HCH-Chr3:57801 2.20E-25 dispersed
HCH3g0004 HCH-Chr3:57801 HCH8g0627 HCH-Chr8:43070543 3.20E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81367 PF00069 Pkinase 2.60E-65 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0004 K08789 - csv:101214945 1973.36