Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0011 ATGATACCCAATATCTCATCTTCCGAACCTTTTTCTTGCTTAGATAATAATGGAATCAACAACAAGAGGAAAAGAAGACCTGCCGGAACCCCAGATCCTGATGCAGAGGTTGTTTCTCTTTCACCTAAAACATTACTAGAATCTGATCGTTACGTGTGTGAGATCTGTAACCAAGGATTTCAGAGAGACCAAAACCTCCAGATGCATAGGCGTCGTCATAAAGTTCCATGGAAGTTGTTAAAGAGAGATACACCTGTTGTTAGGAAAAGGGTTTTCGTATGCCCCGAACCAAGTTGTTTACATCATGATCCTTGTCACGCACTTGGTGATCTTGTTGGTATTAAGAAACATTTTAGAAGAAAACACAGTAATCATAAGCAATGGGTTTGTGATAAATGTTCCAAAGCTTATGCCGTTCAATCTGATTATAAAGCCCATCTCAAGACTTGTGGTACTCGAGGCCATTCTTGTGATTGTGGTCGCGTTTTCTCAAGGGTGGAGAGTTTTATAGAACATCAAGATGCTTGCAATATGGGACATCTCCGGCAACCAGAATCACAGAGCCAGACAGCATGTCTTTCTCGAACTGGAACAGCTTCAGCTAATTCCAGTCAAAGCCCATCCAGTGATACCAATTTTAGCAGTGCTCCTAATTTCATACCTCCACCAAAGCCCCCTCCTATCGATTCCATATTCTTAACCCCTACCAAAGATTCCCACTTAATTATTAAGAATAAAAGGTATCACAATTTAGACCTCAAGCTTTCAACTGCATCATCCAACAGCAACATAGAAGCCAATAATCCTTCTTCTTCTGCAACTCAACTCCAGCTTTCTATTGGTTCCACCTGTGATTTTGGTAACAAAAATAATGCTGACCCAACGACCAACATATCATCATGTAATTCGAAGAAATGTGGGGGTGTGGAAGCATCAGATGTTATTAGAGAAGAAGCTCGAGAGCAGATAAAGCTGGCAGTGGTAGAGAAGGCTTACGCTGAAGAAGCAAGACAGCAAGCAAAACGTCAGATAGAAATAGCAGAGCAAGAATTTGCAAATGCAAAGAGAATGAGGCAACAAGCACAAGCTGAGTTAGATAAGGCTACAGCTCTTAAACAACAAGCAATCAAACAGATCAATTCAACCATTCTTCAAATCACTTGTCAAGAGTGCCAGAAGAAATTTCAATCTCCCGATCGTGATGGTGAGAACTCATTGGCATTCAGTTATGTGTCGTCCGTCATCACCACAGAAGGTGAAGTAGAAAAACATGAACCAACCCTTTTAGCTAAATCGGCTAGTTAA 1305 41.0 MIPNISSSEPFSCLDNNGINNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRDTPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQPESQSQTACLSRTGTASANSSQSPSSDTNFSSAPNFIPPPKPPPIDSIFLTPTKDSHLIIKNKRYHNLDLKLSTASSNSNIEANNPSSSATQLQLSIGSTCDFGNKNNADPTTNISSCNSKKCGGVEASDVIREEAREQIKLAVVEKAYAEEARQQAKRQIEIAEQEFANAKRMRQQAQAELDKATALKQQAIKQINSTILQITCQECQKKFQSPDRDGENSLAFSYVSSVITTEGEVEKHEPTLLAKSAS 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 109603 111495 - evm.model.ptg000005l.1506 HCH3g0011 540739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0011 434 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 73 IPR013087 -
HCH3g0011 434 Gene3D Classic Zinc Finger 105 177 - -
HCH3g0011 434 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 155 177 - -
HCH3g0011 434 MobiDBLite consensus disorder prediction 187 217 - -
HCH3g0011 434 FunFam protein indeterminate-domain 12-like 30 98 - -
HCH3g0011 434 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 384 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH3g0011 434 MobiDBLite consensus disorder prediction 1 18 - -
HCH3g0011 434 Coils Coil 330 378 - -
HCH3g0011 434 MobiDBLite consensus disorder prediction 1 37 - -
HCH3g0011 434 SMART c2h2final6 92 122 IPR013087 -
HCH3g0011 434 SMART c2h2final6 51 73 IPR013087 -
HCH3g0011 434 SMART c2h2final6 128 155 IPR013087 -
HCH3g0011 434 Gene3D Classic Zinc Finger 50 74 - -
HCH3g0011 434 MobiDBLite consensus disorder prediction 187 229 - -
HCH3g0011 434 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 127 151 - -
HCH3g0011 434 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 88 122 - -
HCH3g0011 434 SUPERFAMILY beta-beta-alpha zinc fingers 50 148 IPR036236 -
HCH3g0011 434 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
HCH3g0011 434 Pfam Zinc finger, C2H2 type 51 73 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1389 HCH-Chr10:46466717 HCH3g0011 HCH-Chr3:109603 3.50E-98 dispersed
HCH3g0011 HCH-Chr3:109603 HCH3g0229 HCH-Chr3:1474563 1.60E-109 dispersed
HCH3g0011 HCH-Chr3:109603 HCH3g1260 HCH-Chr3:47541140 1.80E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33270 PF00096 zf-C2H2 0.0041 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0011 K25871 - csv:101209426 588.571