Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0016 ATGGTGTTAACGACTATTGCAGATGCAGACTCGGGTGATTTTGTGAACTCTACTTTTGCTTCCAGATATGTTCGTACTTCTCTTCCAAAGTTCAAAATGGCAGAGAAATCTATACCAAAGGAAGCAGCTTACCAAATAATTCAAGATGAGTTGATGCTGGATGGAATACCGAGGCTGAACTTGGCCTCTTTCGTTACTACGTGGATGGAACCAGAGTGTGAAAAGCTTATCATGGCTTCTATTAACAAGAATTATGTTGACATGGATGAGTACCCTGTCACCACCGAGCTACAGAATCGTTGTGTGAATATGATAGCTGACCTATTCAATGCTCCTCCTGTTGGAGAAGATGGAGCTTCAATTGGTGTCGGGACTGTGGGATCTTCAGAGGCTATAATGCTTGCAGGCCTTGCTTTTAAGAGGAAATGGCAGCAAAAGAGAAAATTACAGGGCAAACCCTATGATAACCCAAACATTGTCACTGGAGCTAATGTGCAGGTTTGCTGGGAGAAGTTTGCAAGATACTTTGAGGTTGAGCTGAAGGAGGTAAACCTTTCTGAAGGATTTTATGTCATGGACCCTGTGAAAGCTGTTCAACTAGTGGATGAGAATACCATCTGTGTTGCAGCAATTTTGGGGTCTACTCTAACAGGAGAGTTTGAGGATGTTAAACTCCTTAATGAACTCCTCTCTAAGAAGAACAATGAAACAGGTTGGGACACCCCGATTCACGTTGATGCTGCCAGTGGAGGGTTTATAGCTCCATTCCTTTATCCTGATCTTGAGTGGGATTTTCGCTTGCCATTAGTGAAGAGCATTAATGTCAGTGGCCACAAGTATGGTCTCGTCTACCCTGGTGTAGGATGGGTTGTTTGGAGGAGTAAAGAGGATTTGCCAGATGAGCTTGTTTTCCACATTAACTATCTTGGATCTGATCAACCCACCTTCACACTCAACTTCTCCAAAGGTTCTAGTCAAATAATCGCTCAGTATTATCAATTTATTCGGCTTGGCTTTGAGGGTTATAAAAACGTCATGGAGAACTGTATGGAGAATGCAAGAGTGCTGAGAAAGGGAATTGAGAAAATGGGAAGGTTTGAGATTCTTTCCAAGGATATTGGGGTACCCCTTGTTGCGTTCACTCTGAAAGACAGCAGCAAACACACCGTGTTTGAGATAGCAGAGAACCTGAGGAGGTTTGGATGGATTGTGCCAGCCTACACAATGCCGGCAGATGCTCAGCACATTGCCGTCCTGCGAGTGGTAATCAGGGAGGACTTCAGCCGTGGTTTAGCAGAGAGACTGGTCTCAGACATTGAGAAAGTTGTGAAGGAAATCGACACCCTTCCAATTCGTGTCTCTGTCATAGCAGCTGAAGTGAAACCTATTGTTGAAGAAGCAGAAGAAACACTTGAAAAGCATTTGAAGAAGGGTGATACTAGAGAAATCCATATTGTTGGAGAAGCAGAAGATGGGAGTGGAGGCACACATACAGAGCATGTGAAGAAGAGTGAGAGAGAGATTCAGGAGGAGGTAATTACGTACTGGAGGAGGCTTGTGGAAGGGAAGAGAACTGGTGTGTGTTAG 1587 44.11 MVLTTIADADSGDFVNSTFASRYVRTSLPKFKMAEKSIPKEAAYQIIQDELMLDGIPRLNLASFVTTWMEPECEKLIMASINKNYVDMDEYPVTTELQNRCVNMIADLFNAPPVGEDGASIGVGTVGSSEAIMLAGLAFKRKWQQKRKLQGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVNLSEGFYVMDPVKAVQLVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNNETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCMENARVLRKGIEKMGRFEILSKDIGVPLVAFTLKDSSKHTVFEIAENLRRFGWIVPAYTMPADAQHIAVLRVVIREDFSRGLAERLVSDIEKVVKEIDTLPIRVSVIAAEVKPIVEEAEETLEKHLKKGDTREIHIVGEAEDGSGGTHTEHVKKSEREIQEEVITYWRRLVEGKRTGVC 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 148314 151114 - evm.model.ptg000005l.1501 HCH3g0016 540744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0016 528 CDD DOPA_deC_like 60 441 - -
HCH3g0016 528 Gene3D - 1 66 - -
HCH3g0016 528 FunFam Glutamate decarboxylase 363 450 - -
HCH3g0016 528 NCBIfam glutamate decarboxylase 17 446 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
HCH3g0016 528 PANTHER GLUTAMATE DECARBOXYLASE 1 525 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
HCH3g0016 528 Pfam Pyridoxal-dependent decarboxylase conserved domain 40 383 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
HCH3g0016 528 Gene3D - 363 450 - -
HCH3g0016 528 Gene3D - 67 362 IPR015421 -
HCH3g0016 528 FunFam Glutamate decarboxylase 67 362 - -
HCH3g0016 528 SUPERFAMILY PLP-dependent transferases 13 446 IPR015424 -
HCH3g0016 528 FunFam Glutamate decarboxylase 7 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1072 HCH-Chr10:38139996 HCH3g0016 HCH-Chr3:148314 1.00E-221 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0016 K01580 - csv:101210903 858.596