Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0018 ATGATGGACTTCCCCGGTGCCTCTGCTTCTGCCTCTGCTGCTGATAATGATAATGATTCCTCCTCCGATCCTCTTCGTCGTAAAAAACGTTATCACCGTCACACTGCCAACCAGATTCAGCGCCTCGAATCAATGTTCAAAGAGTGTCCTCACCCTGATGAGAAACAGAGATTACTTTTGAGTCGAGAGCTTGGATTGGCTCCTCGTCAAATCAAATTTTGGTTTCAGAACAGGAGGACCCAGATGAAGGCTCAACATGAACGAGCAGATAACAGTGCACTTCGAGCCGAGAACGACAAGATTCGATGTGAGAACATTGCCATTAGAGAGGCACTCAAAAATGTCATCTGCCCTTCCTGTGGCGGCCCTCCCATTCATGAAGACTCCTACTTCGATGACCACAAATTACGTATCGAAAACGCCCATTTGAAGGAAGAGCTTGATAGAGTTTCCAGTATTGCTGCTAAATACATTGGAAGGCCAATCTCTCAATTCCCATCCATGCCTCCTCCTCATTTTTCTTCATTAGATTTATCTATCGCTACTTTTCCCTCTCAAGATATCGCTTGCCCTTCTCTTGATCTTGATTTACTTCCCGGAACTTCTTCCAATGTTCCCCTTTTGCCATACCACCCCATTCTTATCTCCGACATGGATAAGTCCCTTATGACTGAGATTGCCACAAATGCCATGGGAGAGCTCCTCAGACTTTCCCAAACGAATGAACCCTTGTGGATTAAGTCACAGACTGATGGAAGAGATATTCTAGACCTCGAAACCTATGAACATGATTTTCCAAGAGCAAACAATCGGTTGAAAAATATCCATATGCGCACCGAAGCATCTAGAGATTCAGGCGTCGTGATCATGAATAGTGCAGCATTAGTTGACATGTTTATGGATTCGAACAAATGGGTTGAGTTATTTCCCTCGATTGTCTCAATTGCAAGACCAATTGAAGTTATAACATCCGGATCCTTGGGAAGTCATAGTGGCTCCTTGCAACTGATGTACCAGGAGTTGCAGGTGCTCTCTCCGTTGGTACCGACTCGCCAATTTTACTTCCTCAGATATTGTCAGCAAATTGAGCAAGGCATGTGGGCTGTAGTTGATGTTTCCTATAATCTCCCCAGAGACGACCAAATAGCTTCTCACTCTCAATGTCACCGCTTTCCATCTGGTTGCTTTATCCAGGACATGCCTAACGGTTATTCCAAGGTCACTTGGATTGAGCATGTGGAAGTTGAAGATAAAGGTTCAACTCATTGGCTTTTTAGAGATCTCATTCATAGTGGATTGGCCTTTGGCGCTGAACGGTGGCTTGCAGCTCTTCAGAGGATTTGTGAAAGGTTTGCCTCTTCAATGGTGACTGCTAGTTCTAACCGGGATCTTGGCGGAGTAATTCTATCAGCAAATGGCAAGAGAAGCATTATGAAACTAGCACAACGAATGGTCAACAATTTTTGTGCTAGTATCAGCACATCTCACGGCCATCGATGGACTACACTTTCTGGAATGAATGAGGTTGGTGTCCGTGTCACAGTCCATAAAAGCACGGATCCTGGCCAACCTAATGGTGTGGTGCTCAGTGCAGCTACTACCATATGGCTCCCAATTTCTCCTCAAACCGTGTTTAACTTCTTTAAGGATGATAGAACTAGATCTCAGTGGGACGTTCTCTCTGATGGCAATCCAGTTCAAGAGGTAGCTCATATAGCCAATGGATCCCATCTTGGGAACTGCATATCTGTTCTTAGAGCTCTGAATACTAGCCAGAACAACATGTTGATTCTACAAGAGAGTTGCATAGATTCATCTGGGTCAGTTGTTGTGTACTGCCCAGTTGATCTACCCGCCATGAATATTGCAATGAGTGGTGAGGATCCATCGTGTATTCCGTTGCTACCTTCAGGATTCACAATTTTACCAGATGGGAGACGGGATGAAGGAGACGGGGTATCGAGCAGCTCGGAGGTGCAGAGCAACATATGTCGGTCAGGAGGGTCACTTGTAACGGTGGCATTTCAGATACTAGTAAGTAGCCTGCCATCAGGGAAACTGAATTTGGAGTCAGTGACAACTGTGAATAACCTAATCAGCACTACAGTCCACCAAATCAAGACAGCCTTAAATTGTCATGGTTCTTGA 2148 45.02 MMDFPGASASASAADNDNDSSSDPLRRKKRYHRHTANQIQRLESMFKECPHPDEKQRLLLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPIHEDSYFDDHKLRIENAHLKEELDRVSSIAAKYIGRPISQFPSMPPPHFSSLDLSIATFPSQDIACPSLDLDLLPGTSSNVPLLPYHPILISDMDKSLMTEIATNAMGELLRLSQTNEPLWIKSQTDGRDILDLETYEHDFPRANNRLKNIHMRTEASRDSGVVIMNSAALVDMFMDSNKWVELFPSIVSIARPIEVITSGSLGSHSGSLQLMYQELQVLSPLVPTRQFYFLRYCQQIEQGMWAVVDVSYNLPRDDQIASHSQCHRFPSGCFIQDMPNGYSKVTWIEHVEVEDKGSTHWLFRDLIHSGLAFGAERWLAALQRICERFASSMVTASSNRDLGGVILSANGKRSIMKLAQRMVNNFCASISTSHGHRWTTLSGMNEVGVRVTVHKSTDPGQPNGVVLSAATTIWLPISPQTVFNFFKDDRTRSQWDVLSDGNPVQEVAHIANGSHLGNCISVLRALNTSQNNMLILQESCIDSSGSVVVYCPVDLPAMNIAMSGEDPSCIPLLPSGFTILPDGRRDEGDGVSSSSEVQSNICRSGGSLVTVAFQILVSSLPSGKLNLESVTTVNNLISTTVHQIKTALNCHGS 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 158050 161246 - evm.model.ptg000005l.1499 HCH3g0018 540746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0018 715 Pfam Homeodomain 28 83 IPR001356 GO:0003677(InterPro)
HCH3g0018 715 CDD homeodomain 27 86 IPR001356 GO:0003677(InterPro)
HCH3g0018 715 Gene3D - 224 455 IPR023393 -
HCH3g0018 715 SUPERFAMILY Homeodomain-like 7 85 IPR009057 -
HCH3g0018 715 ProSiteProfiles START domain profile. 216 453 IPR002913 GO:0008289(InterPro)
HCH3g0018 715 MobiDBLite consensus disorder prediction 1 33 - -
HCH3g0018 715 Gene3D - 13 101 - -
HCH3g0018 715 FunFam Homeobox-leucine zipper protein HDG1 14 101 - -
HCH3g0018 715 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH3g0018 715 CDD START_ArGLABRA2_like 220 449 - -
HCH3g0018 715 SMART START_1 225 450 IPR002913 GO:0008289(InterPro)
HCH3g0018 715 FunFam Homeobox-leucine zipper protein GLABRA 2 225 449 - -
HCH3g0018 715 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 712 IPR042160 -
HCH3g0018 715 SUPERFAMILY Bet v1-like 217 452 - -
HCH3g0018 715 SMART HOX_1 26 89 IPR001356 GO:0003677(InterPro)
HCH3g0018 715 Pfam START domain 226 450 IPR002913 GO:0008289(InterPro)
HCH3g0018 715 SUPERFAMILY Bet v1-like 474 707 - -
HCH3g0018 715 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0018 HCH-Chr3:158050 HCH9g0441 HCH-Chr9:2808110 1.00E-206 dispersed
HCH9g0519 HCH-Chr9:3344617 HCH3g0018 HCH-Chr3:158050 6.20E-06 dispersed
HCH9g0528 HCH-Chr9:3409055 HCH3g0018 HCH-Chr3:158050 4.60E-06 dispersed
HCH3g0018 HCH-Chr3:158050 HCH7g0229 HCH-Chr7:1529625 1.90E-192 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33272 PF01852 START 8.50E-46 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0018 K09338 - csv:101215660 1216.06