Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0019 ATGCCTGCTTTTGAAAAAGATGATGTACCCATGCTATCAAACACCGATCCACCATTGTTGGACTTGGATGAACGCCTCCCTTCTCAATTTCCTTCTTATGCATCATTGACCCGTACTTCTTCCATACCAATTCCTACAACTTCCATTGAGATGTATGGTCATGAAGCCAACCTTGTTGGCCATACGGGTCCACTTCGAATTGCAAAGAAAGCTCCACTCATGCCCAGCCGCAGACATGAACAACTTCTGCAACCAAATCCACATGTTACCGAAACCAAAACCCTTGACAAATTTTCTTCTTTCAAGGTAAATGATGAATCTGACTGGCCCATAGATCATTATGCAGCCAGAAATGAACACTTACTAAGGTCTGGCCAATTGGGAGTCTGCAATGATCCTTTTTGCATAACCTGCCCCACATACGATTCCAGAGCATCCCTGCACAAAACCTCTAAAATGTCAGGCATATTTGAGCACACGTTTCATAACGATTTCTATGGAGATGCGAAAGGTTGGGCGGGGAAGATTTTATCTTTCTTGCTTCCATATATTCCTGGAGTGATGAATCCTCATGCAAAAGTTGTTCAACAATGGAACAAATTTTTTGTCATTTCTTGCTTAGTGGCAATCTTCTTGGATCCATTATTTTTCTTCTTGCTTTCTGTCCAGCAGAACAATAAGTGCGTAGTTATTGACTGGCCCATGACCACAACATTGGTGGTTTTCCGAAGCATGACTGATTTTATCTACTTCCTACACATGCTTCTCCAGTTTAGGTTGGCTTACGTGGAACCGGAAACCAGAGTGGTTGGTGCAGGCGAATTAGTTGACCATCCGAAGAAAATTGCTCTACATTACCTTCATGGATTCTTTCTTATAGACTTGTTTGTTGTTTTGCCATTGCCTCAGATAATAGTTTTTCTAGTCCTGCCAAATTCTTTGGGGTCATCTGGAGCAAACCGCGCAAAAAATCTACTACGCGCTGCAGTTCTTGTTCAATATATTCCCAGATTGTCTAGGTTCCTACCTCTTCTCGCTGGTCAGTCTCCGAGTGGTTTTATCTTTGAGACAGCATGGGCAAATTTTGTTATTAATCTATTCACTTTTATGCTGGCCGGTCATGTTGTTGGGGCTCTCTGGTACCTTTTTGGGCTTCAGAGGGTGACTAGATGTCTTCGAGATGCCTGTCTCTCATACGGAAAAGATGTTTGCTCAAAACTTATAGATTGTGGGCATGGGGTTGACAGTTATCATCGTGAACCACAGTGGGAAAAATGGAGAGAAGATAATAATGCTACGACATGTTTTACCGGAGGAAGTTTTGACTATGGAATCTACCTTCGAGCTGCAAACCTTACTACAGAACATAGTGTAATCACCAGATATATATACTCGTTATTCTGGGGATTTCAGCAAATCAGTACTCTGGCCGGGAATCAAACTCCAAGCTATTTTCCAGGGGAAGTCCTCTTCACCATGGGCATTATTGGTCTTGGTCTGTTGTTGTTTGCTCTTCTCATTGGGAATATGCAAAACTTTCTCCAGGCACTTGGAAGAAGGAGGTTAGAAATGTCACTAAGACGTCGTGATGTTGAGCTGTGGATGAAGCATAGACGCTTGCCAGAGAATTTAAGAAGGAAAGTACGGCAAGCCGAAAGGTATAATTGGGCTTCCACAAGAGGCGTAAATGAAGAAAGGATTTTGGAGAACTTGCCAGAGGACCTTCAAAGGAACATTAGACGACATCTCTTTAAATTTGTCGAGAAAGTTAGAATTTTTGCCCTGATGGATTATGAGCCTATTTTAGATTCAATACGTGAGAGACTGCGGCAGAAGACATACATAGAAGGGAGTGAAGTTTTTTCTTCTGGTGATATTATTGAGAAGATGGTTTTCATTGTACGGGGAAAAATGGAGAGCCGCGTAGATGGGATTGTGGTTCCCTTATCTGAAGGAGATGTCTGCGGTGAGGAACTTCTGACGTGGTGCCTTGAGCATTCTTCTGTAAACAGAGATATGAAGCGACCTCAAGTTCCAGGACAAAGATTGATCAGCAACAGGACAGTAAGGTGCTTATCAAATGTTGAAGCATTTTCTCTCCGAGCTGCAGACCTTGAAGAAGTGACTAGTATGTTTTCCAGATTCTTGCGAAATCCACGTGTTCAAGGAGCCATTAGGTATGAATCACCCTACTGGAGGTACCTAGCAACGACGCGTATTCAGGTGGCTTGGAGATACAGGAAAAAGCGTCTAAGTCGGGCTGAAGCCTCGCGATCTAACGACTAA 2286 42.91 MPAFEKDDVPMLSNTDPPLLDLDERLPSQFPSYASLTRTSSIPIPTTSIEMYGHEANLVGHTGPLRIAKKAPLMPSRRHEQLLQPNPHVTETKTLDKFSSFKVNDESDWPIDHYAARNEHLLRSGQLGVCNDPFCITCPTYDSRASLHKTSKMSGIFEHTFHNDFYGDAKGWAGKILSFLLPYIPGVMNPHAKVVQQWNKFFVISCLVAIFLDPLFFFLLSVQQNNKCVVIDWPMTTTLVVFRSMTDFIYFLHMLLQFRLAYVEPETRVVGAGELVDHPKKIALHYLHGFFLIDLFVVLPLPQIIVFLVLPNSLGSSGANRAKNLLRAAVLVQYIPRLSRFLPLLAGQSPSGFIFETAWANFVINLFTFMLAGHVVGALWYLFGLQRVTRCLRDACLSYGKDVCSKLIDCGHGVDSYHREPQWEKWREDNNATTCFTGGSFDYGIYLRAANLTTEHSVITRYIYSLFWGFQQISTLAGNQTPSYFPGEVLFTMGIIGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVELWMKHRRLPENLRRKVRQAERYNWASTRGVNEERILENLPEDLQRNIRRHLFKFVEKVRIFALMDYEPILDSIRERLRQKTYIEGSEVFSSGDIIEKMVFIVRGKMESRVDGIVVPLSEGDVCGEELLTWCLEHSSVNRDMKRPQVPGQRLISNRTVRCLSNVEAFSLRAADLEEVTSMFSRFLRNPRVQGAIRYESPYWRYLATTRIQVAWRYRKKRLSRAEASRSND 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 165911 177650 - evm.model.ptg000005l.1498 HCH3g0019 540747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0019 761 Gene3D - 198 513 - -
HCH3g0019 761 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 183 756 - -
HCH3g0019 761 Gene3D Jelly Rolls 590 714 IPR014710 -
HCH3g0019 761 Pfam Ion transport protein 200 518 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g0019 761 CDD CAP_ED 592 708 IPR000595 -
HCH3g0019 761 SUPERFAMILY cAMP-binding domain-like 520 716 IPR018490 -
HCH3g0019 761 MobiDBLite consensus disorder prediction 1 20 - -
HCH3g0019 761 Gene3D Helix hairpin bin 514 584 - -
HCH3g0019 761 SUPERFAMILY Voltage-gated potassium channels 193 521 - -
HCH3g0019 761 ProSiteProfiles cAMP/cGMP binding motif profile. 602 660 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0019 HCH-Chr3:165911 HCH5g0868 HCH-Chr5:7137778 8.10E-109 dispersed
HCH3g0019 HCH-Chr3:165911 HCH9g0186 HCH-Chr9:1095262 1.20E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0019 K05391 - csv:101215903 1177.54