Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0031 ATGGGGAGAAAGAAGAGAACCGATGATGGTGGTGAGAGTTCTGATACTCAGATGGGCGGTGGCCGTGGTTACCAACAATCTGCCGAAAGGAGAGATCCCCCACAGCACCGTGGTGGTGGTGGATATCAGGGTGGGAGAGGCTGGGATTCCCAAGGGGGCCGTGGAGGTCAAGGTGGCGGTGGCCGCGGCCGTGGAATGTCTCAACATCAGCACTATGGAGGAGGACCTCCTGAGTTTCAAGGCAGGGGTAGAGGTGGCCCATATCCACAGGGAGGACGTGGTGGCTATGGCGGTGGTAATCGTGGGGGCACTGGAGGAGGACATTCTGGTGGCCCATCCAGGACCCAAGTTCCCGAGCTGCACCAAGCATCATCTGTGGCGAGTTCTTCCCACACGACTGAGATTCTGAGTCTAGAAGAACAGTGTCAGAGACTTGCGATTCAGCAGGAATCTTCCCCTAACCAAGCAATTCAACCTGCACCACCTTCAAGTAAATCTATGAGATTTCCTCTGAGACCAGGAAAGGGTAGCACTGGCACAAGGTGTGTTGTCAAGGCTAATCACTTCTTTGCCGAGTTACCGGACAAAGATCTTCATCAGTATGATGTTACTATCACTCCAGAGGTCACTTCCCGTGTTTATAATCGAGCTGTGATGCAGCAGCTAGTGAAATTATACAGGGTATCTCACCTTGGAGACCGTCTTCCTGCCTATGATGGGAGGAAGAGTCTATATACTGCTGGGCCCCTTCCTTTCATATCAAAAGAGTTCAAAATCTCTCTTTTTGATGAAGATGATGGATCAGGAGCACAAAGGCGTGAGAAAGAATTTAAAGTTGTGATAAAGTTGGCTGCTCGTGCGGACCTACACCATTTAGGACTCTTTCTGCAGGGAAGACAGGCTGATGCCCCTCAGGAAGCCCTTCAGGTTCTGGACATTGTTCTCCGTGAATTGCCTACTTCTAGGTATTGCCCAGTGGGCCGATCGTTTTACTCTCCAGATCTTGGCAGACGTCAGACGCTGGGTGAGGGGTTAGAAAGCTGGCGTGGGTTTTATCAAAGTATACGCCCTACTCAGATGGGGCTCTCTCTAAACATTGATATGTCCTCTACTGCATTCATTGAGCCTTTGCCTGTCATTGATTTTGTGACTCAGCTTCTCAACCGCGACGTTTCATCCAGACCATTATCTGATGCTGATCGTGTGAAGATAAAGAAAGCTCTCCGAGGTGTCAAGGTTGAAGTCACACACCGCGGGAATATGCGCAGAAAATATCGTATATCTGGTTTAACGTCACAGGCAACACGTGAACTTAATTTTCCGGTTGATGAAAGAGGTACTATGAAGTCTGTGGTTGAATACTTCTATGAAACCTACGGGTTTGTCATCGTGCATACCCAGTGGCCTTGTCTTCAAGTGGGGAACCAGCAGAGGCCTAATTATTTGCCGATGGAAGTATGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTCAATGAAAGACAGATTACTGCTTTGCTCAAGGTTACGTGCCAACGACCAAAAGATAGAGAGGCAGACATTATGGAGACTGTTCGTCATAATGCGTATCATGAAGATCCATACGCAAAAGAGTTCGGAATTAAGATAAGTGAGAAGCTCGCCTCTGTTGAAGCTCGCATTCTTCCTCCACCGTGGCTGAAATATCATGACACAGGTAGGGAAAAAGATTGCTTGCCGCAAGTTGGGCAGTGGAATATGATGAACAAGAAAATGTTCAATGGTGGTACTGTCAGCAACTGGATGTGCGTAAATTTCTCTCGGTACGTTCAAGATAGTATTTCACGTGGGTTTTGTACCGAGCTAGCTCAAATGTGTCATATCTCTGGCATGGATTTCAATCCAGATCCTGTCCTGCCTCCTATTCTTGCTCGTCCTGATCAGGTGGAAAAGGCCCTTAAAACACGGTATCATGATGCAATGAGCATACTCCAACCCCAGGGAAAAGACCTAGACTTGCTTATTGTTATTTTGCCAGATAATAATGGATCTCTTTATGGTGATTTAAAGCGTATTTGTGAGACAGATCTTGGCCTTGTTTCTCAGTGTTGTTTGACAAAGCATGTCTTCAAAATGAGCAAGCAGTATTTAGCCAATGTAGCCCTGAAGATAAATGTTAAAGTTGGCGGAAGGAACACAGTACTTGTTGATGCATTATCCAGGCGTATACCCTTAGTTAGTGACAGGCCTACTATTATATTTGGTGCTGATGTTACCCATCCTCATCCAGGGGAAGACTCAAGCCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCAGAAGTTACTAAATATGCTGGTTTGGTCAGTGCTCAAGCCCATAGGCAAGAGCTCATTCAAGATCTATTCAAAACGTGGCAGGATCCTGTGAGGGGGACAGTAACGGGTGGAATGATCAAGGAACTCCTCATATCCTTCCGCAGAGCAACTGGACAGAAACCTCAACGCATCATTTTCTACAGGGATGGGGTTAGTGAAGGACAGTTCTACCAAGTTTTGTTGCATGAGCTGGATGCCATTCGAAAGGCATGTGCTTCTCTGGAACCAAACTACCAACCTCCAGTGACTTTTGTTGTGGTCCAGAAGCGTCATCACACAAGGTTGTTTGCAAATAACCATGCTGATCGCCACGCGGTAGATAAGAGTGGGAATATATTACCTGGTACTGTGGTTGACTCAAAAATTTGTCATCCAACGGAATTTGACTTCTACCTGTGTAGTCATGCTGGAATCCAGGGCACAAGTCGCCCTGCACATTACCATGTCCTGTGGGACGAGAACAAGTTTACAGCGGATGGATTACAGACTCTGACAAACAATCTATGTTATACGTATGCAAGGTGCACCCGCTCTGTTTCTATTGTGCCACCAGCATATTATGCTCACCTTGCTGCATTCCGTGCTCGTTTTTATATGGAACCTGAAACATCTGATAGTGGATCAATAAGCAGTGGTGTTAATGCCTCCGGACGCGGTGGTATGGTCGGCAGTGGTGCTGGTGCGCGCAGTACTCGGGCACCTGGGTGTAATGCTGCTGTACGACCATTACCAGCTCTCAAGGAGAATGTGAAGAGGGTTATGTTCTATTGTTAA 3138 47.16 MGRKKRTDDGGESSDTQMGGGRGYQQSAERRDPPQHRGGGGYQGGRGWDSQGGRGGQGGGGRGRGMSQHQHYGGGPPEFQGRGRGGPYPQGGRGGYGGGNRGGTGGGHSGGPSRTQVPELHQASSVASSSHTTEILSLEEQCQRLAIQQESSPNQAIQPAPPSSKSMRFPLRPGKGSTGTRCVVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMQQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFISKEFKISLFDEDDGSGAQRREKEFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYCPVGRSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELNFPVDERGTMKSVVEYFYETYGFVIVHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREADIMETVRHNAYHEDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVSNWMCVNFSRYVQDSISRGFCTELAQMCHISGMDFNPDPVLPPILARPDQVEKALKTRYHDAMSILQPQGKDLDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHADRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSGVNASGRGGMVGSGAGARSTRAPGCNAAVRPLPALKENVKRVMFYC 1045
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 222455 228186 - evm.model.ptg000005l.1486 HCH3g0031 540759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0031 1045 CDD PAZ_argonaute_like 376 490 - -
HCH3g0031 1045 SUPERFAMILY PAZ domain 184 527 IPR036085 GO:0005515(InterPro)
HCH3g0031 1045 MobiDBLite consensus disorder prediction 109 134 - -
HCH3g0031 1045 FunFam Argonaute 10 555 730 - -
HCH3g0031 1045 CDD Piwi_ago-like 535 987 IPR045246 -
HCH3g0031 1045 Pfam PAZ domain 380 507 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH3g0031 1045 Pfam Mid domain of argonaute 574 649 IPR032473 -
HCH3g0031 1045 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 170 994 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
HCH3g0031 1045 Gene3D - 555 730 - -
HCH3g0031 1045 Pfam N-terminal domain of argonaute 181 315 IPR032474 -
HCH3g0031 1045 Gene3D paz domain 370 495 - -
HCH3g0031 1045 MobiDBLite consensus disorder prediction 1 134 - -
HCH3g0031 1045 SMART PAZ_2_a_3 381 513 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH3g0031 1045 Pfam Glycine-rich region of argonaut 74 162 IPR024357 -
HCH3g0031 1045 SUPERFAMILY Ribonuclease H-like 662 988 IPR012337 -
HCH3g0031 1045 Gene3D - 736 1045 IPR036397 GO:0003676(InterPro)
HCH3g0031 1045 MobiDBLite consensus disorder prediction 149 176 - -
HCH3g0031 1045 ProSiteProfiles Piwi domain profile. 667 988 IPR003165 GO:0003676(InterPro)
HCH3g0031 1045 SMART DUF1785_2 324 376 IPR014811 -
HCH3g0031 1045 Pfam Argonaute linker 1 domain 325 375 IPR014811 -
HCH3g0031 1045 FunFam Protein argonaute-2 370 496 - -
HCH3g0031 1045 Pfam Piwi domain 668 987 IPR003165 GO:0003676(InterPro)
HCH3g0031 1045 ProSiteProfiles PAZ domain profile. 378 491 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH3g0031 1045 FunFam protein argonaute 10-like 736 1045 - -
HCH3g0031 1045 Pfam Argonaute linker 2 domain 517 563 IPR032472 -
HCH3g0031 1045 SMART Piwi_a_2 667 988 IPR003165 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0896 HCH-Chr1:57417040 HCH3g0031 HCH-Chr3:222455 2.60E-171 dispersed
HCH3g0031 HCH-Chr3:222455 HCH7g1262 HCH-Chr7:45486412 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0031 K11593 - csv:101212130 1825.83