Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0032 ATGGCCTCTCATACCTTTATTTTCACTCTTCTCTCTATCATTCTTCTGTTCCCAGTTGCTTGTTTTGCCTCCCGTGGCTTGAAGATGAATGCCATTGATAGATGCTGGAGAATGAACCCTTATTGGAGAAGAAACCGGCAACAGCTTGCTGTTTGTTCTGTAGGTTTTGCTGGAAAGATGACTAATAATATAGGGAGAAATCTCATTCACTACCAAGTTACTGATCCAAGCGATGATCCCTTGAACCCTCGGCCCGGTACGCTACGATACGGTGCCACCATGATTAAGGGTAAGGTTTGGATCACATTCAGGAGAAGTATGCGTATTACACTTCACAGACCTCTTCTCATCAGTAGCTTCACTGCCATCGATGGCCGAGGCGCAACCGTTCATATCACCGGGTACGGTTGTTTCATGGTTTTCAAGGCTAGCAATATAATAATTCATGGGCTAAGAATCCACCACTGCAAGCCTCAAGAGGCGAGTCAAGTAATGGGACCAGATTCAAAGATAATGCCAATTGGGCGAGTGGACGGCGATGCCATCAGATTAGTGACAGCGTCAAAGGTTTGGATTGACCACAACACACTATACCGTTGTCAAGATGGGCTGCTGGATGTTACAAGAGGCTCTACTGATATCACCATTTCTAACAATTGGTTTAGAGACCAAGACAAAGTTATTCTTTTGGGACACGATGATGGTTTTGTAAGAGACAAGAACATGAAAGTCACTCTTGTTTATAACCATTTTGGTCCTAACTGCAACCAAAGGATGCCCAGGATTCGATATGGATATGCACACGTGGCCAATAATCTCTACCAAGGTTGGACACAATACGCTATTGGAGGGAGCATGAATCCTAGTGTTAAGAGTGAAGCTAACCTTTTCATTGCACCCAAATCAGGGAACAAACAGGTGATGTGGAAAACAGGGAATGCAGAAGACAGGAATTGGAACTTCTACTCAATTGGAGATGCTTTTGAAAATGGAGCTTCGTTTGCAAGATCTGGTATGGGGCCAAGAGCAGCTGTAACACCAAACTACAACTCCCAACAGTGGTTTAAAGTAGGAAATACCAAGTTTTTGAGATCATTGACTAGTTCATCAGGGGCATTGGAATGTGCAAGAAACTCTAGATGTTAA 1146 43.63 MASHTFIFTLLSIILLFPVACFASRGLKMNAIDRCWRMNPYWRRNRQQLAVCSVGFAGKMTNNIGRNLIHYQVTDPSDDPLNPRPGTLRYGATMIKGKVWITFRRSMRITLHRPLLISSFTAIDGRGATVHITGYGCFMVFKASNIIIHGLRIHHCKPQEASQVMGPDSKIMPIGRVDGDAIRLVTASKVWIDHNTLYRCQDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGFVRDKNMKVTLVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIAPKSGNKQVMWKTGNAEDRNWNFYSIGDAFENGASFARSGMGPRAAVTPNYNSQQWFKVGNTKFLRSLTSSSGALECARNSRC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 232911 234331 + evm.model.ptg000005l.1485 HCH3g0032 540760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0032 381 SMART amb_all 106 303 IPR002022 -
HCH3g0032 381 Gene3D - 29 374 IPR012334 -
HCH3g0032 381 PANTHER PECTATE LYASE 18-RELATED 28 377 IPR045032 GO:0030570(InterPro)
HCH3g0032 381 Pfam Pectate lyase 119 297 IPR002022 -
HCH3g0032 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
HCH3g0032 381 PRINTS Pollen allergen Amb family signature 178 199 IPR018082 -
HCH3g0032 381 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
HCH3g0032 381 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
HCH3g0032 381 PRINTS Pollen allergen Amb family signature 319 343 IPR018082 -
HCH3g0032 381 PRINTS Pollen allergen Amb family signature 114 130 IPR018082 -
HCH3g0032 381 PRINTS Pollen allergen Amb family signature 52 69 IPR018082 -
HCH3g0032 381 SUPERFAMILY Pectin lyase-like 29 371 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0032 HCH-Chr3:232911 HCH3g0520 HCH-Chr3:3431045 3.80E-83 dispersed
HCH1g0952 HCH-Chr1:57750682 HCH3g0032 HCH-Chr3:232911 4.10E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0032 K01728 - csv:101217103 594.734