Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0046 ATGGAAGGAAGTGATGAGCTTCATTACCACCACCAACACCGTTCAAATTTCCCACTACAATTATTAGAGAAGAAAGAATATGAAGATCAAACCTCATGTTTTAGCTCCGGCTACCCGTCTTCGAGTTTCCAGTCGGTTGCCGAGGCCGAGCCCTCGAAGAAGCCTTCACCCAAAAGAACCTCAACCAAGGACCGCCATACCAAAGTCGACGGCCGAGGCCGCCGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTTCAACTCACCCGGGAGCTTGGTCACAAGTCCGACGGTGAAACTATTGAGTGGCTTCTTCAGCAGGCTGAGCCTGCTGTGATTGCAGCCACTGGTACTGGCACTATACCAGCCAATTTCAACTCTCTCACTACCTCATTAAGAAGATCATCAAGCACTAGCATTTCATTACCTTCCCATCTAAGATCTTCTTCTTACTATCATCCAGGAGATATAGTGATGCCGCTCCATTCTCAACCCATCAATATGGGTTCCATGACGCAAGCAAAAGAAGATCATTTATCTGATCCGCAGTATCAAATGGGAAGCTATTTGCTGCAGTCAACCACGGGGTCTATGCCAACATGTCATGCTGCAAATATTCCAGCAAATTTTTGGATGCTTACAAATTCTAATAACCATTTAGTTGGAGACTCTTTATGGAGACTTCCAGTTCCTTCTCTTAATCATGATCATAATCGAGGAACAACTTCTTCTGGTGCTGCTGCTGGATATGAGTTACGTTTGACTAATTTTGCTGCTCCCTTGACACTCCTCCCAGGCCAGCCAAGCGGCGGCAGTAGTGGTGGTGGTGATGGAAGTATGAACCAAGGACACTACTCACAGGGATCGGCGCCAGATACCGGGGTTTCATAG 894 47.2 MEGSDELHYHHQHRSNFPLQLLEKKEYEDQTSCFSSGYPSSSFQSVAEAEPSKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLTTSLRRSSSTSISLPSHLRSSSYYHPGDIVMPLHSQPINMGSMTQAKEDHLSDPQYQMGSYLLQSTTGSMPTCHAANIPANFWMLTNSNNHLVGDSLWRLPVPSLNHDHNRGTTSSGAAAGYELRLTNFAAPLTLLPGQPSGGSSGGGDGSMNQGHYSQGSAPDTGVS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 291674 292953 - evm.model.ptg000005l.1471 HCH3g0046 540774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0046 297 MobiDBLite consensus disorder prediction 267 297 - -
HCH3g0046 297 ProSiteProfiles TCP domain profile. 62 116 IPR017887 -
HCH3g0046 297 MobiDBLite consensus disorder prediction 32 76 - -
HCH3g0046 297 MobiDBLite consensus disorder prediction 32 49 - -
HCH3g0046 297 Pfam TCP family transcription factor 60 154 IPR017887 -
HCH3g0046 297 MobiDBLite consensus disorder prediction 52 75 - -
HCH3g0046 297 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 50 236 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
HCH3g0046 297 MobiDBLite consensus disorder prediction 262 297 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0046 HCH-Chr3:291674 HCH9g0048 HCH-Chr9:277479 1.40E-29 dispersed
HCH1g0935 HCH-Chr1:57626817 HCH3g0046 HCH-Chr3:291674 5.80E-45 wgd
HCH3g0046 HCH-Chr3:291674 HCH8g1306 HCH-Chr8:48103877 2.50E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33276 PF03634 TCP 5.90E-35 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0046 - - - 0.0