Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0068 ATGGGAAGGGTTAAGCTAAAAATAAAGAAATTAGAGAGCAATGGTAGCAGGCAAGTGACTTACTCTAAAAGAAGGCATGGTATTTTGAAGAAAGCTAAAGAATTAGCTATACTTTGTGATATTGATATCATTCTTCTCATGTTTTCGCCAACCGGAAGGCCTACGCTATACCAAGGTGAACGCAGCAGCATTGAAGAGGTCATTGCTAAATTTGCTCAATTGACTCCACAGGAAAGAGCAAAAAGAAAATTGGAGAGCCTTGAAGCGCTGAAGAAAACTTTCAAGAAGTTAGACCATGATGTAAACATAAAAGATTTTGTGGGCTCAAGCTCTCAAGATGTTGAGGAACTGACCAATGAAGTTAGCATATTGCGAGATCAGATTTCTGAGGCACATACGAGACTGAGCTATTGGAGGAATCCCGAAAATATCAACAATATAGAACACCTCCAGCAGATGGAAGATTTAATTAGAGAGTCTCTTAACCAAACGCATTTACACAAGGAAAACTTAAGAAGGCATCAACTATTGTCACAGGAGTTCACTAGCCAGCTTCAGAGTGGGATGCCCTTACCTTTAATAATGGACGAAGTGCAAGGAGCTCAACCGCTGCTATGGCTTCCCAATTACGACACTCAACATATTACCTTACCAAACGAGCCTAACTTTCTGCAACCTGGTGATGTTGAATGCTCTATGGCTACCTCTTTTCCAAGCTATCCCAGTTACTATAACCCTGGCAAAATCGAAGCTGGGATTTCTGGGCAAGTTGATAGCATGCCACAAGGTGACGGTGCTTTAAATGAATTAAGTGGAACTTCTTGCTCAACACTGCAACTTGGTGAGCAATATCCATACCCTGCATGTGATGGTTCTAACTTCCATGATGAAAGGAGAATGAAGCTTGGAATGGAGATGAACTTACATGATGAAACGAGAATGAAGCTTGAGATGGAGATGAACTTACATGCAAATTATGTGGATAATCAAATAGATAACAAGATGGAAGTATCTAGATCTCTGTATAGTAATGAGCAGCATCCTTGGGCGTCTGTGCCGGGGCCTTGCAGCATTCCCGTGTATCAAAGCAATGCATACCACCATCAACCGAATTGA 1116 41.31 MGRVKLKIKKLESNGSRQVTYSKRRHGILKKAKELAILCDIDIILLMFSPTGRPTLYQGERSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIKDFVGSSSQDVEELTNEVSILRDQISEAHTRLSYWRNPENINNIEHLQQMEDLIRESLNQTHLHKENLRRHQLLSQEFTSQLQSGMPLPLIMDEVQGAQPLLWLPNYDTQHITLPNEPNFLQPGDVECSMATSFPSYPSYYNPGKIEAGISGQVDSMPQGDGALNELSGTSCSTLQLGEQYPYPACDGSNFHDERRMKLGMEMNLHDETRMKLEMEMNLHANYVDNQIDNKMEVSRSLYSNEQHPWASVPGPCSIPVYQSNAYHHQPN 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 396940 400601 + evm.model.ptg000005l.1449 HCH3g0068 540796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0068 371 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 Gene3D - 14 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 Coils Coil 114 134 - -
HCH3g0068 371 Coils Coil 77 97 - -
HCH3g0068 371 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
HCH3g0068 371 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH3g0068 371 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0068 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1262 HCH-Chr13:40509985 HCH3g0068 HCH-Chr3:396940 1.50E-22 dispersed
HCH3g0068 HCH-Chr3:396940 HCH3g0454 HCH-Chr3:2878345 1.60E-14 dispersed
HCH3g0068 HCH-Chr3:396940 HCH14g0430 HCH-Chr14:33325126 2.80E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012582 0 5 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33280 PF00319 SRF-TF 1.50E-18 No_clan HCH TF