Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0068 ATGGGAAGGGTTAAGCTAAAAATAAAGAAATTAGAGAGCAATGGTAGCAGGCAAGTGACTTACTCTAAAAGAAGGCATGGTATTTTGAAGAAAGCTAAAGAATTAGCTATACTTTGTGATATTGATATCATTCTTCTCATGTTTTCGCCAACCGGAAGGCCTACGCTATACCAAGGTGAACGCAGCAGCATTGAAGAGGTCATTGCTAAATTTGCTCAATTGACTCCACAGGAAAGAGCAAAAAGAAAATTGGAGAGCCTTGAAGCGCTGAAGAAAACTTTCAAGAAGTTAGACCATGATGTAAACATAAAAGATTTTGTGGGCTCAAGCTCTCAAGATGTTGAGGAACTGACCAATGAAGTTAGCATATTGCGAGATCAGATTTCTGAGGCACATACGAGACTGAGCTATTGGAGGAATCCCGAAAATATCAACAATATAGAACACCTCCAGCAGATGGAAGATTTAATTAGAGAGTCTCTTAACCAAACGCATTTACACAAGGAAAACTTAAGAAGGCATCAACTATTGTCACAGGAGTTCACTAGCCAGCTTCAGAGTGGGATGCCCTTACCTTTAATAATGGACGAAGTGCAAGGAGCTCAACCGCTGCTATGGCTTCCCAATTACGACACTCAACATATTACCTTACCAAACGAGCCTAACTTTCTGCAACCTGGTGATGTTGAATGCTCTATGGCTACCTCTTTTCCAAGCTATCCCAGTTACTATAACCCTGGCAAAATCGAAGCTGGGATTTCTGGGCAAGTTGATAGCATGCCACAAGGTGACGGTGCTTTAAATGAATTAAGTGGAACTTCTTGCTCAACACTGCAACTTGGTGAGCAATATCCATACCCTGCATGTGATGGTTCTAACTTCCATGATGAAAGGAGAATGAAGCTTGGAATGGAGATGAACTTACATGATGAAACGAGAATGAAGCTTGAGATGGAGATGAACTTACATGCAAATTATGTGGATAATCAAATAGATAACAAGATGGAAGTATCTAGATCTCTGTATAGTAATGAGCAGCATCCTTGGGCGTCTGTGCCGGGGCCTTGCAGCATTCCCGTGTATCAAAGCAATGCATACCACCATCAACCGAATTGA 1116 41.31 MGRVKLKIKKLESNGSRQVTYSKRRHGILKKAKELAILCDIDIILLMFSPTGRPTLYQGERSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIKDFVGSSSQDVEELTNEVSILRDQISEAHTRLSYWRNPENINNIEHLQQMEDLIRESLNQTHLHKENLRRHQLLSQEFTSQLQSGMPLPLIMDEVQGAQPLLWLPNYDTQHITLPNEPNFLQPGDVECSMATSFPSYPSYYNPGKIEAGISGQVDSMPQGDGALNELSGTSCSTLQLGEQYPYPACDGSNFHDERRMKLGMEMNLHDETRMKLEMEMNLHANYVDNQIDNKMEVSRSLYSNEQHPWASVPGPCSIPVYQSNAYHHQPN 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 396940 400601 + evm.model.ptg000005l.1449 HCH3g0068 540796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0068 371 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 Gene3D - 14 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 Coils Coil 114 134 - -
HCH3g0068 371 Coils Coil 77 97 - -
HCH3g0068 371 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
HCH3g0068 371 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH3g0068 371 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0068 371 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1262 HCH-Chr13:40509985 HCH3g0068 HCH-Chr3:396940 1.50E-22 dispersed
HCH3g0068 HCH-Chr3:396940 HCH3g0454 HCH-Chr3:2878345 1.60E-14 dispersed
HCH3g0068 HCH-Chr3:396940 HCH14g0430 HCH-Chr14:33325126 2.80E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33280 PF00319 SRF-TF 1.50E-18 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0068 - - - 0.0