Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH3g0068 | ATGGGAAGGGTTAAGCTAAAAATAAAGAAATTAGAGAGCAATGGTAGCAGGCAAGTGACTTACTCTAAAAGAAGGCATGGTATTTTGAAGAAAGCTAAAGAATTAGCTATACTTTGTGATATTGATATCATTCTTCTCATGTTTTCGCCAACCGGAAGGCCTACGCTATACCAAGGTGAACGCAGCAGCATTGAAGAGGTCATTGCTAAATTTGCTCAATTGACTCCACAGGAAAGAGCAAAAAGAAAATTGGAGAGCCTTGAAGCGCTGAAGAAAACTTTCAAGAAGTTAGACCATGATGTAAACATAAAAGATTTTGTGGGCTCAAGCTCTCAAGATGTTGAGGAACTGACCAATGAAGTTAGCATATTGCGAGATCAGATTTCTGAGGCACATACGAGACTGAGCTATTGGAGGAATCCCGAAAATATCAACAATATAGAACACCTCCAGCAGATGGAAGATTTAATTAGAGAGTCTCTTAACCAAACGCATTTACACAAGGAAAACTTAAGAAGGCATCAACTATTGTCACAGGAGTTCACTAGCCAGCTTCAGAGTGGGATGCCCTTACCTTTAATAATGGACGAAGTGCAAGGAGCTCAACCGCTGCTATGGCTTCCCAATTACGACACTCAACATATTACCTTACCAAACGAGCCTAACTTTCTGCAACCTGGTGATGTTGAATGCTCTATGGCTACCTCTTTTCCAAGCTATCCCAGTTACTATAACCCTGGCAAAATCGAAGCTGGGATTTCTGGGCAAGTTGATAGCATGCCACAAGGTGACGGTGCTTTAAATGAATTAAGTGGAACTTCTTGCTCAACACTGCAACTTGGTGAGCAATATCCATACCCTGCATGTGATGGTTCTAACTTCCATGATGAAAGGAGAATGAAGCTTGGAATGGAGATGAACTTACATGATGAAACGAGAATGAAGCTTGAGATGGAGATGAACTTACATGCAAATTATGTGGATAATCAAATAGATAACAAGATGGAAGTATCTAGATCTCTGTATAGTAATGAGCAGCATCCTTGGGCGTCTGTGCCGGGGCCTTGCAGCATTCCCGTGTATCAAAGCAATGCATACCACCATCAACCGAATTGA | 1116 | 41.31 | MGRVKLKIKKLESNGSRQVTYSKRRHGILKKAKELAILCDIDIILLMFSPTGRPTLYQGERSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIKDFVGSSSQDVEELTNEVSILRDQISEAHTRLSYWRNPENINNIEHLQQMEDLIRESLNQTHLHKENLRRHQLLSQEFTSQLQSGMPLPLIMDEVQGAQPLLWLPNYDTQHITLPNEPNFLQPGDVECSMATSFPSYPSYYNPGKIEAGISGQVDSMPQGDGALNELSGTSCSTLQLGEQYPYPACDGSNFHDERRMKLGMEMNLHDETRMKLEMEMNLHANYVDNQIDNKMEVSRSLYSNEQHPWASVPGPCSIPVYQSNAYHHQPN | 371 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 396940 | 400601 | + | evm.model.ptg000005l.1449 | HCH3g0068 | 540796 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH3g0068 | 371 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH3g0068 | 371 | Gene3D | - | 14 | 96 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH3g0068 | 371 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH3g0068 | 371 | Coils | Coil | 114 | 134 | - | - | |
HCH3g0068 | 371 | Coils | Coil | 77 | 97 | - | - | |
HCH3g0068 | 371 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH3g0068 | 371 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH3g0068 | 371 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH3g0068 | 371 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH3g0068 | 371 | FunFam | Agamous-like MADS-box protein AGL30 | 14 | 96 | - | - | |
HCH3g0068 | 371 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 224 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH3g0068 | 371 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 55 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
HCH3g0068 | 371 | CDD | MADS_SRF_like | 2 | 82 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g1262 | HCH-Chr13:40509985 | HCH3g0068 | HCH-Chr3:396940 | 1.50E-22 | dispersed | |
HCH3g0068 | HCH-Chr3:396940 | HCH3g0454 | HCH-Chr3:2878345 | 1.60E-14 | dispersed | |
HCH3g0068 | HCH-Chr3:396940 | HCH14g0430 | HCH-Chr14:33325126 | 2.80E-14 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33280 | PF00319 | SRF-TF | 1.50E-18 | No_clan | HCH | TF |
Pathway information
