Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0070 ATGGCATTTCTTAGGTTCTTCTTATTTTGGTTTCTTTCTTTTTGCTCATTTGTTAACCATGGTTGCGGTGGAAGCTGGATAACCAATGGTCGTGCCACTTTCTATGGAGGTCCTGATGCCTCTGGTACAATGGGTGGGGCCTGTGGATATGGAAACAGTGAGGTATATGGAACTAAAGCAACAGCTTTGAGCACAACTTTGTTCAACAGTGGACTTAGCTGTGGGGCTTGCTTTGAGATCAAATGTGTCAATGACCCAAAATGGTGCCTCCATGGCTCTGTTGTGGTCACTACTACAAACTTCTGTCCACCCGGCGGCTGGTGTGACTCTCCCCACCACCATTTTGATCTTTCCCGGCCCGCCTTCGAGACCATTGCTCACTCCATCGCCGGGGTCATGCCCGTGGCTTACAAAAGGGTACCCTGTGGGAGGAAGGGAGGCAGAAGATTCACAATAAATGGAAATCCTTATTTCAACCTAGTATTGATAACAAACGTTGGAGGAGCAGGGGATGTTCATGCAGTTTATATTAAAGGGTCAAAGACTGGTTGGAAAAGCATGAGTAGGAATTGGGGTCAAAGCTGGCAGAGCAACGATAACCTAGTTGGACAAAGCCTGTCTTTTAAGGTTACTACTAGCGATGGCCGTACACTTGTCTCTTACAATGTTGCCCCTTCTGCCTGGTCCTTTGGACAGACCTTCTCTGGAAAACAATTCACTTGA 723 47.03 MAFLRFFLFWFLSFCSFVNHGCGGSWITNGRATFYGGPDASGTMGGACGYGNSEVYGTKATALSTTLFNSGLSCGACFEIKCVNDPKWCLHGSVVVTTTNFCPPGGWCDSPHHHFDLSRPAFETIAHSIAGVMPVAYKRVPCGRKGGRRFTINGNPYFNLVLITNVGGAGDVHAVYIKGSKTGWKSMSRNWGQSWQSNDNLVGQSLSFKVTTSDGRTLVSYNVAPSAWSFGQTFSGKQFT 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 402889 404008 - evm.model.ptg000005l.1447 HCH3g0070 540798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0070 240 FunFam Expansin 147 239 - -
HCH3g0070 240 CDD DPBB_EXPA_N 28 142 - -
HCH3g0070 240 SMART dpbb_1 60 137 IPR007112 -
HCH3g0070 240 Pfam Lytic transglycolase 61 137 IPR009009 -
HCH3g0070 240 Gene3D - 18 142 IPR036908 -
HCH3g0070 240 PANTHER EXPANSIN-A15 10 239 IPR002963 GO:0009664(InterPro)
HCH3g0070 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 147 IPR007112 -
HCH3g0070 240 SUPERFAMILY Barwin-like endoglucanases 7 165 IPR036908 -
HCH3g0070 240 PRINTS Expansin signature 146 158 IPR002963 GO:0009664(InterPro)
HCH3g0070 240 PRINTS Expansin signature 105 122 IPR002963 GO:0009664(InterPro)
HCH3g0070 240 PRINTS Expansin signature 82 93 IPR002963 GO:0009664(InterPro)
HCH3g0070 240 PRINTS Expansin signature 158 179 IPR002963 GO:0009664(InterPro)
HCH3g0070 240 PRINTS Expansin signature 193 214 IPR002963 GO:0009664(InterPro)
HCH3g0070 240 PRINTS Expansin signature 55 69 IPR002963 GO:0009664(InterPro)
HCH3g0070 240 PRINTS Expansin signature 122 135 IPR002963 GO:0009664(InterPro)
HCH3g0070 240 PRINTS Expansin signature 222 238 IPR002963 GO:0009664(InterPro)
HCH3g0070 240 PRINTS Expansin signature 94 104 IPR002963 GO:0009664(InterPro)
HCH3g0070 240 SUPERFAMILY PHL pollen allergen 144 235 IPR036749 -
HCH3g0070 240 Pfam Expansin C-terminal domain 149 225 IPR007117 -
HCH3g0070 240 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576(InterPro)
HCH3g0070 240 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
HCH3g0070 240 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576(InterPro)
HCH3g0070 240 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576(InterPro)
HCH3g0070 240 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
HCH3g0070 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
HCH3g0070 240 Gene3D - 149 239 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0070 HCH-Chr3:402889 HCH3g1367 HCH-Chr3:51405928 5.30E-83 dispersed
HCH12g1363 HCH-Chr12:34433414 HCH3g0070 HCH-Chr3:402889 9.90E-130 transposed
HCH1g0914 HCH-Chr1:57522355 HCH3g0070 HCH-Chr3:402889 4.70E-90 wgd
HCH13g0724 HCH-Chr13:6105552 HCH3g0070 HCH-Chr3:402889 6.10E-93 wgd
HCH3g0070 HCH-Chr3:402889 HCH4g0896 HCH-Chr4:5762602 7.20E-96 wgd
HCH3g0070 HCH-Chr3:402889 HCH8g1292 HCH-Chr8:48034614 6.70E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0070 - - - 0.0