Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0077 ATGAACCGTGTATTCAATTCATACCCAGATGAGAATTATGCGAATATCAGGAAGTTGTTGATGAGACAGTTACATGATGATTCAAAGAGTTTGTTGGATAAAGATTCAAACTTTGATTTGAACTTGAAGAACAATCATGAAAGGAAATGTGGGTTCAGTTCTATTAGAATTATGGGTGTTTTTGTGGTTTTGACAATGTTGCTTTCTGTGATTTTTTCTCTCTCTGTGGTTCTTAAAGATCCTCCTTCTGACGATGTTATGGAAGTTTCTGATGTCAAGATTCGTGTTGTGGATTCTGATAAAGACTTTCGGGATGGAGTTTCTCAGACGGTTATGCAGCCAATTGATAAACTCCTTGGTGGCCTTCTTTCTGCTGGACACCGGGAAGGTTCTTGTCTCAGTAGGTATGGTTCAGTTGCTTATCGACACAAGCTAGATCACGAACCCGCTTCTTACCTAATCTCCAAATTGCGGAGTTATGAAGCTCTTCACAAGCGTTGTGGAGTTTATACTGAATACTACAACAAGACTTTGGAGCAGCTTTTGTCTAATCATAGTAGCAGCTCCTCAGACTGTAAATATCTTGTGTGGATTTCCTTCAGTGGATTAGGGAATAGGATACTTACCCTGGCTTCAGCATTTCTTTATGCTCTCCTTACAAATCGTGTGCTTCTTGTTGACCCCGGAACTGACATGACCGATCTCTTCTGTGAACCATTTCCTGAGGTTTCCTGGTTTCTTCCCCCAGATTTCCCTTTAACAGATGAGCTCAGCAACTTCAATCAGGACTCTCCTAATTGCTATGGGAAAATTATGAAGAATAGTGTGACGAAAAGCTCAAGGGGGTTCATTCCACCATCTGTTGTCTATCTTCACTTGGTCCGTGATTATGATGATCATGACAAGCTTTTTTTCTGTGATCAAGATCAAGCTCTTCTGCAAAAAATACCTTGGCTCATTATGAAAACAGACAACTACTTCGTCCCGTCTCTCTTTCTGATCCCATCATTTGAGGAAGAACTGAATGATCTCTTCCCAAATAAAGATACAGTTTTCCACTTCTTGGGTCGGTATCTGTTTCACCCAGTAAATTCAGTTTGGGGGCTCGTTACAAGATATTATCAAGCTTACTTAGCTAGAGCAAGTGAAAGAATAGGTATCCAGATAAGAGTGTTTGATACAGGGGTTGGACCATTTCAGCATATCCTGGATCAGATTCTGGCATGTACCCTGAAGGAGAATCTGTTGCCACCGATCGATAGGCAGAAGAATATCATCAGTCCTGCTGGTAATCCCAAGTCAAAGGCTGTGTTGATGACATCTTTGAGCCCCGGTTACTTCGAGATGTTAAAAGACATTTACTGGGAACATCCAACGGTCACGGGAGAGAGAATAAGCATCTACCAACCAAGTCATGAGGAACATCAACAAACTAATAACAGTGTACACAACCAGAAGGCATTGGCAGAGATGTATTTGTTAAGTTTAACTGATGTGTTGGTCACTAGCTCATGGTCAACCTTTGGATATGTGGCTCAAGGTCTCGGCGGTCTGAAACCATGGATATTACACAAACCTGAAAATCGCACAGCCCCTGATCCACCTTGCCGTCGAGCCATGTCGATGGAGCCTTGTTTCCATGCGCCTCCATTCTATGACTGCAAGGCGAAGACGGGAGTGGACACTGGTAAACTTGTTCCTCATGTGAGACATTGTGAGGACATGGCCTGGGGTCTAAAGCTGGTTGATGATCATTATGATTGA 1764 42.35 MNRVFNSYPDENYANIRKLLMRQLHDDSKSLLDKDSNFDLNLKNNHERKCGFSSIRIMGVFVVLTMLLSVIFSLSVVLKDPPSDDVMEVSDVKIRVVDSDKDFRDGVSQTVMQPIDKLLGGLLSAGHREGSCLSRYGSVAYRHKLDHEPASYLISKLRSYEALHKRCGVYTEYYNKTLEQLLSNHSSSSSDCKYLVWISFSGLGNRILTLASAFLYALLTNRVLLVDPGTDMTDLFCEPFPEVSWFLPPDFPLTDELSNFNQDSPNCYGKIMKNSVTKSSRGFIPPSVVYLHLVRDYDDHDKLFFCDQDQALLQKIPWLIMKTDNYFVPSLFLIPSFEEELNDLFPNKDTVFHFLGRYLFHPVNSVWGLVTRYYQAYLARASERIGIQIRVFDTGVGPFQHILDQILACTLKENLLPPIDRQKNIISPAGNPKSKAVLMTSLSPGYFEMLKDIYWEHPTVTGERISIYQPSHEEHQQTNNSVHNQKALAEMYLLSLTDVLVTSSWSTFGYVAQGLGGLKPWILHKPENRTAPDPPCRRAMSMEPCFHAPPFYDCKAKTGVDTGKLVPHVRHCEDMAWGLKLVDDHYD 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 445407 448530 - evm.model.ptg000005l.1440 HCH3g0077 540805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0077 587 PANTHER FUCOSYLTRANSFERASE 2-RELATED 49 584 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0008417(PANTHER)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
HCH3g0077 587 Gene3D - 189 243 - -
HCH3g0077 587 Gene3D - 370 540 - -
HCH3g0077 587 FunFam Galactoside 2-alpha-L-fucosyltransferase 190 241 - -
HCH3g0077 587 Pfam Xyloglucan fucosyltransferase 103 555 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0077 HCH-Chr3:445407 HCH6g0553 HCH-Chr6:31261761 2.60E-155 dispersed
HCH1g0906 HCH-Chr1:57481918 HCH3g0077 HCH-Chr3:445407 8.40E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0077 K13681 - csv:101219153 933.71