Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0083 ATGGGTTGCGTTAACTCGAAGCAAACAGTCTCTGTAACGCCTGCATTTGATCATTCCGGCGCCCACGAGTCTTTCAATTCAGCCAGAACCGGAGCTGCCTTTGCACATTTCGAGAAGACCGTGAAATCCAATGATAACACCAAGACTGTTGATAATAAAGCTTCTCGTGAAATGGGTGATTCCGGAAATCATGAATCTCTCAGTTTCAGATTGGGGAATTTTAATCAGTATGTACAAGGAGAGCAAGTTGCCGCTGGATGGCCGGCTTGGCTTAGCGCCGTCGCCGGTGAGGCCATTCATGGTTGGGTTCCACTCCGTTCTGATGCTTATGAGAAGTTGGAAAAGATCGGACAAGGTACGTATAGCAGTGTATTCCGAGCACGTGAACTTGAAACGGGGAGGATTGTTGCTTTGAAGAAGGTCCGGTTCGACAATTTCGAGCCTGAAAGCGTTCGGTTTATGGCACGAGAGATTATGATTCTCCGGAGGCTTGATCATCCGAACATCATTAAGTTGGAAGGACTAATTACTTCACGTTTATCATGTAGCATTTACCTTGTCTTTGAATACATGGATCATGACATTACTGGACTCTTGTCCTGCCCTGACATCACGTTTAGTGAATCACAGATTAAATGCTACATCAAACAATTGTTATCCGGGCTTGAGCATTGTCACTCACGTGGTGTCATGCATCGGGACATTAAAGGATCTAATCTTCTGGTCAATAATGAAGGGATATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATTCCGGGCACCGACAACCTCTAACCAGTCGTGTTGTCACTTTATGGTATCGCCCTCCCGAACTTCTACTCGGCTCAACAGACTATAGTTCATCTGTAGATCTTTGGAGTGTTGGCTGTGTTTTTGCAGAACTCCTTGTTGGGAAACCTATCCTTCAGGGAAGAACAGAGGTAGAACAGCTACACAAGATTTTCAAGCTTTGCGGCTCTCCTCCTGATGACTATTGGAAAAAATCTAAACTTCCTCATGCTACTTTGTTCAAGCCACAACATCCTTATAATAATTGTTTAAGGGAAACATTTAAGGATTTTCATTTGACCACTGTCAACCTATTGGAAACTCTTCTTTCCGTCGAACCGTACAAGCGTGGGGCCGCTTCCAATGCTCTTACATCTGAGTATTTCAGTACAAAACCTTATGCTTGTGATCCATCAAACTTTCCAATATATCCACCTAGCAAAGAGATCGATGCAAAACATCGAGAGGACGCTAGAAGAAAAAAGGTTAGCGGAAGAGCCCGTGGACTTGAAAACAGAAGATCAACAAGAAAGCACCTTGGAATCAATAAACTAGCACCAGCAGAGGAGTCAGCAGTCTCAATTCGAGATTCGCATAAAATTAGTATTAATTCCCAAAGTTTTAAAGAAGGAAAGGTTGCCAAAGTTGTTGAGGCACAAAAGCTGTCAATCGATAAATTGGAAGAGACTATACATGTAAAGAATGCATCTCAAGGAGACATTCCCTTTCCTGGCCCCCTTGAAGTTTCTACATCAAGCGGCTTTGCATGGGCGAGACGACGAAAAGACGATGCCTCTGTTAGATCCCACACTAGATCAATTTCACGAGGACACCTAATTAATCCGTTGGAGCAATCTGCTACATTTAATTCAAGAAGCAATTTTGACTCCAAACTTCATGAAAATGGAGATATATATGGTAGCCGCTCTAATTCCAGAGGGCATGAATCAAAGGAGAGAGCTAAGGTTGTAATATGGAATCAGTGGGGCAAGTTTGAGCGTCCTGATTCCTTTGATACTGCTGATGAGTACCACTCACAGGAACTCTCAAAGGCGCTTTATCCGCAAGATGAAATGGAAGCTAAGAGGAGTAATCTGGATCAAGTGGACAAAGTTGAATATTCAGGACCCTTGTTATCTCAATCTTGCAGAGTGGACGAACTTTTAGATCGACACGAGAGGCATATCCGACAGACAGTTCGAAGATCATGGTTCCAAAAAGGTTGGAAAAACTCAAGAGACTTTGGTCAGAAAGCAACTTGA 2058 43.25 MGCVNSKQTVSVTPAFDHSGAHESFNSARTGAAFAHFEKTVKSNDNTKTVDNKASREMGDSGNHESLSFRLGNFNQYVQGEQVAAGWPAWLSAVAGEAIHGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYIKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFCNSGHRQPLTSRVVTLWYRPPELLLGSTDYSSSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKSKLPHATLFKPQHPYNNCLRETFKDFHLTTVNLLETLLSVEPYKRGAASNALTSEYFSTKPYACDPSNFPIYPPSKEIDAKHREDARRKKVSGRARGLENRRSTRKHLGINKLAPAEESAVSIRDSHKISINSQSFKEGKVAKVVEAQKLSIDKLEETIHVKNASQGDIPFPGPLEVSTSSGFAWARRRKDDASVRSHTRSISRGHLINPLEQSATFNSRSNFDSKLHENGDIYGSRSNSRGHESKERAKVVIWNQWGKFERPDSFDTADEYHSQELSKALYPQDEMEAKRSNLDQVDKVEYSGPLLSQSCRVDELLDRHERHIRQTVRRSWFQKGWKNSRDFGQKAT 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 478617 482876 - evm.model.ptg000005l.1434 HCH3g0083 540811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0083 685 PANTHER CELL DIVISION PROTEIN KINASE 110 394 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
HCH3g0083 685 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
HCH3g0083 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0083 685 CDD STKc_CDK9_like 110 394 - -
HCH3g0083 685 FunFam probable serine/threonine-protein kinase At1g54610 193 433 - -
HCH3g0083 685 MobiDBLite consensus disorder prediction 413 439 - -
HCH3g0083 685 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0083 685 SMART serkin_6 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0083 685 FunFam probable serine/threonine-protein kinase At1g54610 97 192 - -
HCH3g0083 685 Gene3D Transferase(Phosphotransferase) domain 1 193 433 - -
HCH3g0083 685 SUPERFAMILY Protein kinase-like (PK-like) 104 400 IPR011009 -
HCH3g0083 685 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0083 685 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0083 HCH-Chr3:478617 HCH7g1131 HCH-Chr7:44079946 8.50E-158 dispersed
HCH13g0702 HCH-Chr13:5729325 HCH3g0083 HCH-Chr3:478617 2.30E-195 wgd
HCH3g0083 HCH-Chr3:478617 HCH4g0122 HCH-Chr4:668730 2.00E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81369 PF00069 Pkinase 1.20E-67 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0083 - - - 0.0