Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH3g0127 | ATGTCTTTTGAAGAATATGAGTTTCTGTTCTTTCCTTCAACACTTACCAGTTTCAATCTCTTCTTCTGTCTATTTCTGTTTATCGCTGTCTTTTCTCTCTGGCTAACTCCTGGTGGTCTCTCTTGGGGATTGATTTCATTTTCAAAGTCTAAAAACAAACCGACCATTCCTGGCCCTTCTGGCCTTCCTCTTCTTGGTCTAGTTTTTGCCTTTACTGCCTCTCTGACTCATAGGATTCTCGCCAAGCTCTCTCAGAGCTTCAAGGCCAAGTCCTTAATGTCATTCTCTGTTGGGTTTACTCGTTTTGTCATCTCTAGCTGCCCCAACACTGCTAAAGAGCTTTTGAACAGCTCGGCTTTCGCCGATCGTCCAGTTAAGGAGTCGGCTTACGAGTTGTTGTTCCATAGAGCAATGGGGTTTGCTCCTTTTGGAGAGTATTGGAGGAACCTCAGGAGAATCTCAGCTACTCATTTGTTTAGTCCTAAGAGAATCTCTAGTTTTGGGGTGTTTAGGATGAAGATTGGGCTTCAAATGGTGGAGGAAATCAAGGGTTTGATGGAGAAGAAAGGGGAGGTGGAAGTGAGGAAAGTTTTGCATTTTGGATCTTTGAATAATGTCATGCAAAGTGTGTTTGGGAAAAGTTATGAGTTTGGTGAGAGTGGGGAGCTTGAGGGTTTGGTAAGTGAAGGGTATGATTTGCTTGGGAGTTTTAATTGGAGTGATCACTTTCCTCTTTTGGGTTGGTTGGATTTGCAAGGTGTGAGGAAAAGGTGCAAAGTTTTGGTGGCTAAAGTCAATGTTTTTGTTGGGAAAATCATTGAAGAGCATAGGATTAAGAATGAAATCACTGCAGGAGCTGCCTCCATGGATGATGGAGATGAGATCATGAGCTCTGGTGATTTTGTTGATGTGTTGCTTAATTTGGAAAAGGAAAACAAACTCAGTGACTCTGATATGATTGCTGTGTTGTGGGAAATGATCTTCAGAGGCACAGACACTGTAGCAATTCTCCTAGAATGGACACTAGCACGAATGGTTCTACATCCTGAAATCCAAAACAAAGTTCAGTCCGAAATCGACAAAGTTGTTGAAACCGGCCGAAACGTTTCCGATACCGACGTCCTCAACCTCTCTTACCTCCATGCTGTCGTGAAAGAAACCCTAAGAATGCACCCACCAGGACCACTCCTCTCATGGGCTCGGCTCGCCATCCACGACACACACATCGGCGGTCACTTCATCCCGGCGGGCACGACAGCGATGGTGAACATGTGGGCCATAACACATGATGAACATGTCTGGTCTAACCCACTTGAATTCCAACCAGAGAGATTCATGAAAGAAGACATAGCAATCATGGGGTCTGATCTTAGGTTGGCTCCATTCGGTTCAGGAAGAAGGGTTTGTCCTGGTAAAGCCATGGGATTAGCCACTGTTGAGCTCTGGCTCGCTCAGTTGCTTCAAAGCTTCAAATGGGAGATGGTTGATTCAGACAAAACTGGAGTGGATTTGTCTGAATGCTTGAAACTCTCTCTGGAAATGAAGCATTCTTTGATCTGCAAGGCAGTTCCTAGGGTTAAAGCTTCATTTTCTCACCCATGA | 1602 | 44.57 | MSFEEYEFLFFPSTLTSFNLFFCLFLFIAVFSLWLTPGGLSWGLISFSKSKNKPTIPGPSGLPLLGLVFAFTASLTHRILAKLSQSFKAKSLMSFSVGFTRFVISSCPNTAKELLNSSAFADRPVKESAYELLFHRAMGFAPFGEYWRNLRRISATHLFSPKRISSFGVFRMKIGLQMVEEIKGLMEKKGEVEVRKVLHFGSLNNVMQSVFGKSYEFGESGELEGLVSEGYDLLGSFNWSDHFPLLGWLDLQGVRKRCKVLVAKVNVFVGKIIEEHRIKNEITAGAASMDDGDEIMSSGDFVDVLLNLEKENKLSDSDMIAVLWEMIFRGTDTVAILLEWTLARMVLHPEIQNKVQSEIDKVVETGRNVSDTDVLNLSYLHAVVKETLRMHPPGPLLSWARLAIHDTHIGGHFIPAGTTAMVNMWAITHDEHVWSNPLEFQPERFMKEDIAIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAQLLQSFKWEMVDSDKTGVDLSECLKLSLEMKHSLICKAVPRVKASFSHP | 533 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 811990 | 814178 | + | evm.model.ptg000005l.1390 | HCH3g0127 | 540855 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH3g0127 | 533 | Gene3D | Cytochrome P450 | 45 | 529 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g0127 | 533 | CDD | CYP78 | 88 | 518 | - | - | |
| HCH3g0127 | 533 | Pfam | Cytochrome P450 | 57 | 498 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g0127 | 533 | PRINTS | E-class P450 group I signature | 338 | 364 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g0127 | 533 | PRINTS | E-class P450 group I signature | 459 | 469 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g0127 | 533 | PRINTS | E-class P450 group I signature | 423 | 447 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g0127 | 533 | PRINTS | E-class P450 group I signature | 201 | 219 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g0127 | 533 | PRINTS | E-class P450 group I signature | 381 | 399 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g0127 | 533 | PRINTS | E-class P450 group I signature | 469 | 492 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g0127 | 533 | PRINTS | E-class P450 group I signature | 318 | 335 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g0127 | 533 | FunFam | Cytochrome P450 78A5 | 48 | 525 | - | - | |
| HCH3g0127 | 533 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 462 | 471 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH3g0127 | 533 | PRINTS | P450 superfamily signature | 460 | 469 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g0127 | 533 | PRINTS | P450 superfamily signature | 382 | 393 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g0127 | 533 | PRINTS | P450 superfamily signature | 329 | 346 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g0127 | 533 | PANTHER | CYTOCHROME P450 78A7-RELATED | 17 | 522 | IPR051996 | - | |
| HCH3g0127 | 533 | SUPERFAMILY | Cytochrome P450 | 56 | 525 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g1031 | HCH-Chr13:30164780 | HCH3g0127 | HCH-Chr3:811990 | 8.70E-142 | dispersed | |
| HCH2g0137 | HCH-Chr2:9640380 | HCH3g0127 | HCH-Chr3:811990 | 3.30E-133 | dispersed | |
| HCH3g0127 | HCH-Chr3:811990 | HCH14g0532 | HCH-Chr14:34282395 | 8.20E-68 | dispersed | |
| HCH1g1142 | HCH-Chr1:58889835 | HCH3g0127 | HCH-Chr3:811990 | 8.50E-155 | transposed | |
| HCH3g0127 | HCH-Chr3:811990 | HCH4g0157 | HCH-Chr4:876781 | 1.70E-201 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH3g0127 | K20619 | - | csv:101203458 | 765.763 |