Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0127 ATGTCTTTTGAAGAATATGAGTTTCTGTTCTTTCCTTCAACACTTACCAGTTTCAATCTCTTCTTCTGTCTATTTCTGTTTATCGCTGTCTTTTCTCTCTGGCTAACTCCTGGTGGTCTCTCTTGGGGATTGATTTCATTTTCAAAGTCTAAAAACAAACCGACCATTCCTGGCCCTTCTGGCCTTCCTCTTCTTGGTCTAGTTTTTGCCTTTACTGCCTCTCTGACTCATAGGATTCTCGCCAAGCTCTCTCAGAGCTTCAAGGCCAAGTCCTTAATGTCATTCTCTGTTGGGTTTACTCGTTTTGTCATCTCTAGCTGCCCCAACACTGCTAAAGAGCTTTTGAACAGCTCGGCTTTCGCCGATCGTCCAGTTAAGGAGTCGGCTTACGAGTTGTTGTTCCATAGAGCAATGGGGTTTGCTCCTTTTGGAGAGTATTGGAGGAACCTCAGGAGAATCTCAGCTACTCATTTGTTTAGTCCTAAGAGAATCTCTAGTTTTGGGGTGTTTAGGATGAAGATTGGGCTTCAAATGGTGGAGGAAATCAAGGGTTTGATGGAGAAGAAAGGGGAGGTGGAAGTGAGGAAAGTTTTGCATTTTGGATCTTTGAATAATGTCATGCAAAGTGTGTTTGGGAAAAGTTATGAGTTTGGTGAGAGTGGGGAGCTTGAGGGTTTGGTAAGTGAAGGGTATGATTTGCTTGGGAGTTTTAATTGGAGTGATCACTTTCCTCTTTTGGGTTGGTTGGATTTGCAAGGTGTGAGGAAAAGGTGCAAAGTTTTGGTGGCTAAAGTCAATGTTTTTGTTGGGAAAATCATTGAAGAGCATAGGATTAAGAATGAAATCACTGCAGGAGCTGCCTCCATGGATGATGGAGATGAGATCATGAGCTCTGGTGATTTTGTTGATGTGTTGCTTAATTTGGAAAAGGAAAACAAACTCAGTGACTCTGATATGATTGCTGTGTTGTGGGAAATGATCTTCAGAGGCACAGACACTGTAGCAATTCTCCTAGAATGGACACTAGCACGAATGGTTCTACATCCTGAAATCCAAAACAAAGTTCAGTCCGAAATCGACAAAGTTGTTGAAACCGGCCGAAACGTTTCCGATACCGACGTCCTCAACCTCTCTTACCTCCATGCTGTCGTGAAAGAAACCCTAAGAATGCACCCACCAGGACCACTCCTCTCATGGGCTCGGCTCGCCATCCACGACACACACATCGGCGGTCACTTCATCCCGGCGGGCACGACAGCGATGGTGAACATGTGGGCCATAACACATGATGAACATGTCTGGTCTAACCCACTTGAATTCCAACCAGAGAGATTCATGAAAGAAGACATAGCAATCATGGGGTCTGATCTTAGGTTGGCTCCATTCGGTTCAGGAAGAAGGGTTTGTCCTGGTAAAGCCATGGGATTAGCCACTGTTGAGCTCTGGCTCGCTCAGTTGCTTCAAAGCTTCAAATGGGAGATGGTTGATTCAGACAAAACTGGAGTGGATTTGTCTGAATGCTTGAAACTCTCTCTGGAAATGAAGCATTCTTTGATCTGCAAGGCAGTTCCTAGGGTTAAAGCTTCATTTTCTCACCCATGA 1602 44.57 MSFEEYEFLFFPSTLTSFNLFFCLFLFIAVFSLWLTPGGLSWGLISFSKSKNKPTIPGPSGLPLLGLVFAFTASLTHRILAKLSQSFKAKSLMSFSVGFTRFVISSCPNTAKELLNSSAFADRPVKESAYELLFHRAMGFAPFGEYWRNLRRISATHLFSPKRISSFGVFRMKIGLQMVEEIKGLMEKKGEVEVRKVLHFGSLNNVMQSVFGKSYEFGESGELEGLVSEGYDLLGSFNWSDHFPLLGWLDLQGVRKRCKVLVAKVNVFVGKIIEEHRIKNEITAGAASMDDGDEIMSSGDFVDVLLNLEKENKLSDSDMIAVLWEMIFRGTDTVAILLEWTLARMVLHPEIQNKVQSEIDKVVETGRNVSDTDVLNLSYLHAVVKETLRMHPPGPLLSWARLAIHDTHIGGHFIPAGTTAMVNMWAITHDEHVWSNPLEFQPERFMKEDIAIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAQLLQSFKWEMVDSDKTGVDLSECLKLSLEMKHSLICKAVPRVKASFSHP 533
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 811990 814178 + evm.model.ptg000005l.1390 HCH3g0127 540855
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0127 533 Gene3D Cytochrome P450 45 529 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH3g0127 533 CDD CYP78 88 518 - -
HCH3g0127 533 Pfam Cytochrome P450 57 498 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH3g0127 533 PRINTS E-class P450 group I signature 338 364 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH3g0127 533 PRINTS E-class P450 group I signature 459 469 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH3g0127 533 PRINTS E-class P450 group I signature 423 447 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH3g0127 533 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH3g0127 533 PRINTS E-class P450 group I signature 381 399 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH3g0127 533 PRINTS E-class P450 group I signature 469 492 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH3g0127 533 PRINTS E-class P450 group I signature 318 335 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH3g0127 533 FunFam Cytochrome P450 78A5 48 525 - -
HCH3g0127 533 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 462 471 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH3g0127 533 PRINTS P450 superfamily signature 460 469 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH3g0127 533 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH3g0127 533 PRINTS P450 superfamily signature 329 346 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH3g0127 533 PANTHER CYTOCHROME P450 78A7-RELATED 17 522 IPR051996 -
HCH3g0127 533 SUPERFAMILY Cytochrome P450 56 525 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1031 HCH-Chr13:30164780 HCH3g0127 HCH-Chr3:811990 8.70E-142 dispersed
HCH2g0137 HCH-Chr2:9640380 HCH3g0127 HCH-Chr3:811990 3.30E-133 dispersed
HCH3g0127 HCH-Chr3:811990 HCH14g0532 HCH-Chr14:34282395 8.20E-68 dispersed
HCH1g1142 HCH-Chr1:58889835 HCH3g0127 HCH-Chr3:811990 8.50E-155 transposed
HCH3g0127 HCH-Chr3:811990 HCH4g0157 HCH-Chr4:876781 1.70E-201 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0127 K20619 - csv:101203458 765.763