Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0128 ATGACTTCCATTCCCAAGCTTTCCAGATTTCTCAATCTCATTCTGTTTCTTTTTCTCATCATTTCCTTCACTTCTTCTCCAGCGGAAGCATATGATGCACTTGATCCAACTGGAAATATTACAATCAAATGGGATATAATAAACTGGACTCCAGATGGCTATGTTGCAGTTGTTACGCTATACAACTTCCAGCAATATCGACATATTCAAGCACCGGGCTGGACGTTGGGGTGGACATGGGCAAAGAAGGAAGTAATTTGGAGCATGATGGGAGGTCAAACTACAGAGCAAGGAGACTGTTCAAGATTTAAACCAAACACACCACATTGCTGTAAGAAGGATCCAATTGTTGTGGATTTATTGCCAGGAACTCCATACAATCAACAGATTGCAAATTGCTGCAAAGGTGGAGTTTTAAACTCATGGGTTCAGGATCCAAACCATGCAGCAAGTTCATTCCAGATTAGTGTGGGTGGTTCTGGAACAACTAATAAGACTGTCAGGCTGCCTAGAAACTTCACCCTTCAAGCACCAGGCCCCGGCTACACTTGCGGGCCGGCGAAAATTGTGAAACCAAGTCAATTTATATCGTCAGATAAAAGGCGACTCACTCAAGCTTGGATGACTTGGAATGTTACTTGCATATATTCACAATTTATAGCCCAAAAGACACCCACTTGTTGTGTTTCTCTCTCTTCATTCTATAGTGATACAATTGTAAGCTGTCCAACTTGCAGCTGTGGATGTAAAAGCAATAGTACAGATGCTCTTGGGAGCTGTGTAGATCCAAACTCTCCACATTTGGCTTCAGTTGTATCAGATTCAGGAAAAAACAGTTACACACCACTGGTTCAATGTACAAATCATATGTGTCCAATTAGAGTGCATTGGCATGTGAAGCTCAATTACAAGGAGTACTGGAGGGTGAAAGTCACCATTACAAATTTCAATTACAGAATGAACTATAGTCAATGGAATCTTGTTGTCCAACACCCCAACTTCAATAATCTAACCAAGTTGTTCAGCTTTAATTACAAGTCATTGAGTCCTTATGCTGGCTTAAATGATACTGCCATGTTGTGGGGAGTTCAGCTTTACAATGATGAGCTCATGCAGGCTGGCCCTGAGGGAAATGTGCAATCCGAGATCTTGTTTCAGAAGGACCGAGATATGTTCACTTTCGAGAAGGGCTGGGCGTTCCCACGGAGAGTTTATTTCAATGGTGATAACTGTGTAATGCCACCTCCAGATGCATATCCATATTTGCCAAATGCCAGTCCCCAAAAGATTATTTATATACTTTCTCCAATCATAACCTTTGTGGCAACTCTGGTAATCCTGTTAGATTATGCATAA 1356 41.52 MTSIPKLSRFLNLILFLFLIISFTSSPAEAYDALDPTGNITIKWDIINWTPDGYVAVVTLYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKPNTPHCCKKDPIVVDLLPGTPYNQQIANCCKGGVLNSWVQDPNHAASSFQISVGGSGTTNKTVRLPRNFTLQAPGPGYTCGPAKIVKPSQFISSDKRRLTQAWMTWNVTCIYSQFIAQKTPTCCVSLSSFYSDTIVSCPTCSCGCKSNSTDALGSCVDPNSPHLASVVSDSGKNSYTPLVQCTNHMCPIRVHWHVKLNYKEYWRVKVTITNFNYRMNYSQWNLVVQHPNFNNLTKLFSFNYKSLSPYAGLNDTAMLWGVQLYNDELMQAGPEGNVQSEILFQKDRDMFTFEKGWAFPRRVYFNGDNCVMPPPDAYPYLPNASPQKIIYILSPIITFVATLVILLDYA 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 820126 822462 + evm.model.ptg000005l.1389 HCH3g0128 540856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0128 451 PIRSF COBRA 4 450 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
HCH3g0128 451 PANTHER PROTEIN COBRA 16 440 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
HCH3g0128 451 Pfam COBRA-like protein 54 217 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0128 HCH-Chr3:820126 HCH8g1231 HCH-Chr8:47672489 1.40E-217 dispersed
HCH3g0128 HCH-Chr3:820126 HCH3g0129 HCH-Chr3:823061 2.30E-23 tandem
HCH3g0128 HCH-Chr3:820126 HCH8g1230 HCH-Chr8:47669485 1.50E-174 wgd
HCH3g0128 HCH-Chr3:820126 HCH9g0320 HCH-Chr9:2011021 1.00E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0128 - - - 0.0