Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0132 ATGGGGAGAGGGAGAGTAGAATTGAAGAGGATTGAGAACAAAATTAACAGGCAGGTGACTTTTGCCAAGAGAAGAAATGGGCTGCTCAAGAAAGCTTATGAGCTCTCAATTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTAACCGTGGAAAGCTTTGTGAGTTCTGTAGTGGCTCTAGTATGATGAAAACACTGGATAAATACCAAAGGTGCAGTTATGGTGCAATGGAAGCTAGCCGTCCAGCAAATGAGACTCAGCAGAGCAATTGGGATGAATATTTGAACCTAAAAGCCAGAGTTGAATTCCTGCAGCGATCTCAGAGGAACCTTCTGGGGGAAGATTTAGGCCCACTGAATACGAAGGATCTTGAGCAGCTGGAGCATCAGTTAGAGACATCCTTGGACCGCATAAGATCCACAAAGACTCAATATATGCTTGACCAGCTAGCAGATCTTCAACACAAGGAAGTATTTCTTATTGAAGCCAACAAAGTTCTAAGAAAGAAGTCGGAAGAAACGAGTGCAGCAGTAGGAGCTGCATGGGGATGGGAAGCAACAGCAGGAGGGCACAACATGGAATATCAAAGCCCTGTAATGGCTTCACAATCAGAGAGTTTCTATCATCCCTCAGATGGCAGCCCCACTTTGCAAATTGGATATAATCCAGTAGGCTCAATGGGGATGAATAATATTGGAGCTCCAATATCACAAAATGTGAATGGATTTATTCCAGGATGGATGCTTTAA 753 43.69 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLCEFCSGSSMMKTLDKYQRCSYGAMEASRPANETQQSNWDEYLNLKARVEFLQRSQRNLLGEDLGPLNTKDLEQLEHQLETSLDRIRSTKTQYMLDQLADLQHKEVFLIEANKVLRKKSEETSAAVGAAWGWEATAGGHNMEYQSPVMASQSESFYHPSDGSPTLQIGYNPVGSMGMNNIGAPISQNVNGFIPGWML 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 843746 847218 + evm.model.ptg000005l.1385 HCH3g0132 540860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0132 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0132 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0132 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0132 250 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH3g0132 250 Pfam K-box region 87 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH3g0132 250 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0132 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH3g0132 250 Coils Coil 125 145 - -
HCH3g0132 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0132 250 FunFam MADS-box transcription factor 1 13 88 - -
HCH3g0132 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH3g0132 250 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0132 250 Gene3D - 13 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0132 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0132 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0132 HCH-Chr3:843746 HCH4g0161 HCH-Chr4:923498 2.00E-48 dispersed
HCH3g0132 HCH-Chr3:843746 HCH3g0133 HCH-Chr3:862544 1.40E-46 tandem
HCH3g0132 HCH-Chr3:843746 HCH4g0160 HCH-Chr4:909457 2.00E-56 wgd
HCH3g0132 HCH-Chr3:843746 HCH9g0326 HCH-Chr9:2032118 8.30E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33285 PF01486 K-box 6.70E-26 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0132 K09264 - csv:101204197 338.191