Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0133 ATGGGGAGGGGAAGAGTGCAACTGAAGAGGATTGAAAACAAGATCAATAGGCAAGTGACTTTCTCAAAGAGGAGGTCTGGTTTGTTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCAGAAGTTGCTTTGATTGTCTTTTCCACTAAGGGAAAGCTTTTTGAATACTCCACTGATTCTTGCATGGAGAAAATTCTTGAACGATATGAAAGGTATTCATACGCAGAGAGGCAGCTTATTGCAAATGATGATCAACCAAATCGAAACTGGACTCTGGAACATGCAAAGCTTAAAGCAAGGATTGAGGTTCTTCAGAAAAACCAAAGGCATTTCATGGGAGAAGATCTTGACCCCTTGAGCCTAAAAGAGCTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCAAGGAAGAACCAACTCATGCATGAATCCATTTCGGAGCTCCAGAAAAAGGATAAGGCACTGCAGGACCAAAACAACGTGTTAACTAAGAAGATAAGGGAGAAGGAGAAAGCACAAGCTCAAAATCCACAGTTGGAGCAGCAGAGTGGTCATGACATGGAACCATCTCCACTTCTCCTACCTCAGCCATTCCAGCCCCTCAACGCATCTTACCATTACTCAACACAAGGGAATGGAAATGAAGACGGAGCCGCCGGTCACGATGGATCCAGCGTTCTCCTGCCGCCGTGGATGATCCGCCACCTCGGTGACTAG 735 44.35 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERQLIANDDQPNRNWTLEHAKLKARIEVLQKNQRHFMGEDLDPLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKDKALQDQNNVLTKKIREKEKAQAQNPQLEQQSGHDMEPSPLLLPQPFQPLNASYHYSTQGNGNEDGAAGHDGSSVLLPPWMIRHLGD 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 862544 866312 + evm.model.ptg000005l.1384 HCH3g0133 540861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0133 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH3g0133 244 MobiDBLite consensus disorder prediction 175 237 - -
HCH3g0133 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0133 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0133 244 Coils Coil 122 145 - -
HCH3g0133 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0133 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0133 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0133 244 Pfam K-box region 86 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH3g0133 244 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0133 244 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0133 244 MobiDBLite consensus disorder prediction 207 221 - -
HCH3g0133 244 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH3g0133 244 FunFam MADS-box transcription factor MADS-MC 13 86 - -
HCH3g0133 244 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0133 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0133 244 Coils Coil 151 188 - -
HCH3g0133 244 Coils Coil 88 108 - -
HCH3g0133 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0133 HCH-Chr3:862544 HCH9g0327 HCH-Chr9:2041713 6.40E-68 dispersed
HCH3g0132 HCH-Chr3:843746 HCH3g0133 HCH-Chr3:862544 1.40E-46 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33286 PF01486 K-box 7.80E-30 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0133 K09264 - csv:101207225 371.703