Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0149 ATGGGTGGGGGTAGAACTAGAACTAGAAGAAAGAAGCAGCATTTCAAAAGAATTCATGCTTTTCCTTGTGGTAAAGCTTCATTTAAAGATGAGCATTCGTTGATCGGAGGCCCCGGGTTTTCGAGGGTGGTTTATTGCAACAATCCTGAGGGATTTGAGGCTAGTCTTCTTAACTATGGTGGCAATTATGTAAAAACTTCAAAGTATACCATTGCCTCCTTTATTCCCAAATCTTTGTTTGAGCAATTCAGGAGAGTTGCAAATTTGTATTTCCTTCTTTGTGCTCTTCTTTCCTTTACGCCGCTATCGCCTTACACATGGGTCAGTAATGTCCTTCCTCTTGTTGTTGTTATTGGAGTTACCATGGGAAAGGAAGCTCTTGAGGATTGGAAAAGAGCAAAGCAGGATATGGAAATGAATAATAGGGAGGTGAAGGTACATCTTGGGGATGGGAATTTTGTGGATACTAAATGGGCGGACTTGAGAGTTGGGGACATAGTTAAAGTGGAGAAGGATGAATTCTTTCCTGCCGATCTCATTTTACTTTCATCGAGTTATGAGGAAGCGATTTGCTACGTGGAGACGACGAACCTCGATGGGGAAACAAATTTGAAACTGAAAAATGCATTAGAAGTGAGCTCAAACTTACATGAAGACTCGAGTTTTCATAATTTCAAGGCTATAATAAAATGTGAAGACCCCAATGCAAATTTGTATTCTTTTGTGGGCAGTATGGATCTTGAGGAGCAGCAATACCCCCTTAGTCCTCAACAGCTTCTTCTTAGAGACTCGAAGTTACGCAATACGGATTTTATTTATGGGGTGGTGATCTTTACGGGTCGTGATACGAAGGTTATTCAGAACTCAACCACTCCTCCTTCCAAGAGAAGCAAGATTGAAAGGAGGATGGACAAGATTGTGTTCTTCCTGTTTGCTTTATTGGTTTTGATATCAATTGCTGGGTCGATTTTCTTCGGAGTTACGACTAGAGATGACATAAAAAATGGAAGAATCACAAGATGGTACCTTCGGCCAGAGAGTACCACGATGTATTACAATCCCAAAAGAGCTCCAGTTGCAGCAATATTGCAGTTTTTGACCTCTCTAATGCTTTTTAGCTATTTAATTCCCATATCATTGTATGTGTCCATAGAAATTGTCAAAGTTCTGCAGAGTGCTTTCATCAACCAAGATCTACACATGTACTATGAGGAAACTGATAAGCCAGCCCATGCCCGTACCTCAAATTTGAATGAAGAGCTTGGCCAAGTTGACACTATACTTTCTGATAAGACGGGGACATTGACATGCAATTCAATGGAATTTATCAAGTGTTCTGTGGCCGGGACTGCTTATGGGCGAGGGATTACAGAAGTTGAGAGGGCTTTTGCAAGGAGGAAGGAGTCAACATTACCTCATGTGACAGCAAACAAGAAGGTCGACGATGCACATCTTAATGATGAAAAACCATCCATCAAGGGGTTCAATTTTAAGGATGAAAGAATAATGGATGGTAATTGGGTGAAGGAGCCTCGAGCAGATGTAATTCAGAAGTTTCTGCAGCTACTGGCCATCTGCCATACTGCATTACCTGAAGTCGATGAGGAAACCGGGAGGATTTCGTATGAAGCTGAATCACCAGATGAGTCAGCTTTTGTGATTGCAGCCAGGGAATTTGGTTTTGAATTCTATGAAAGGACTCAGACAAGCATTTCGCTGCGGGAGTTGGATCGTATCACTGTCAGCAAAGTTGAAAGATCATATCAAATATTGGATATTTTGGAATTTAATAGCTCAAGAAAGCGGATGTCTGTGATTGTAAGAAATTCAAAGGGACAGCTTTTACTACTTTGTAAAGGTGCTGACAGTGTTATGTTTGAAAGACTTTCAAAGAGCGGAAGAGAGTTTGAAGAAGAGACAAGGGTACATGTTAATGAGTATGCTGACGCTGGTTTAAGAACTTTGGTACTGGCATATCGTGACCTCGAGGAGGAAGAATTTAATAAATTTCACAATGAGTTCACCAAAGCCAAGAACTTGGTGAGCACAGATCGCGAAGACGTTATCGATCAATTGACAGAAAGCATTGAAAAAGATTTGATTCTTCTTGGTGCTACAGCAGTTGAAGATAAACTACAAAATGGGGTCCCTGAATGCATTGACAAACTTGCACAAGCTGGAATTAAAATATGGGTTCTAACTGGCGATAAAATGGAAACAGCCATCAACATTGGCTTTGCCTGTAGTTTACTTAGACAAGGAATGAAGCAAATAGTTATCAGCTCCGAGACACCGGAAGGGAAAGCATTAGATAAAGTCGAGGATGACAAATCCGCAGCTATCAAGGCGTTTAAGGCAAGTGTGATTCAACAGTTAAGCGATGCGAGAATATTGCTTACATCTTCAAGTGAAACTGCTGAAGCATTGGCTTTGATAATTGATGGGAAGTCCCTCACCTATGCTCTGGAGGATGATGTCAAGGATTTATTTATGGAGCTTGCTATCGGTTGTGCATCAGTTATATGCTGCAGATCATCTCCAAAACAAAAGGCATTGGTTACCAGATTGGTTAAGGTTAAAACAGGCCACACCACTCTGGCAGTTGGTGATGGTGCAAATGATGTTGGAATGCTCCAAGAAGCAGATATCGGGATTGGTATTAGCGGTGTAGAAGGGATGCAGGCTGTCATGTCAAGTGATATTGCAATAGCACAGTTTCGATTTTTGGAGCGGCTGCTACTTGTACACGGGCATTGGTGTTACAGAAGAATCTCTTCAATGATATGCTATTTCTTCTACAAGAACATTGTTTTTGGGTTCACTCTCTTCTTCTTTGAGTTGTATGCATCATTCTCTGGTCAATCTGTATACAATGACTGGTACCTCGCACTGTATAACGTCTTCTTCACTTCTCTCCCTGTAATTGCATTGGGAGTATTCGACCAGGACGTCTCATCCCGGTTCTGTCTCAAGTTCCCACTTTTATACCAAGAAGGTGTACAAAATGTCTTATTCAGCTGGTTTCGGGTGATTGGCTGGATATTCAACGGGCTACTAAGCGCTGTCATCATCTTCTTCTTTTGTATTCGGGTAATGGAGCATCAAGCTTTCCGCAGCAGTGGAGAAGTTGTTGGACTGGAAATTCTTGGTGCCACCATGTACACATGTGTTGTTTGGGTTGTAAATTGTCAAATGGCATTATCCATCAGTTACTTCACTTATATTCAGCATCTCTTCATCTGGGGCAGCATCATTCTCTGGTACTTATTTCTTCTAGCATATGGAGCTATGGACCCAAACATATCAACCACTGCATATCAGGTCTTCATCGAGGCCTGCGCCCCGGCACCGTCTTTTTGGATCCTCACATTCTTAGCCCTCGTAGCTTCTCTTCTACCGTATTTCACCTACACATCGATTCAAATGCGGTTCTTCCCAATGTACCATCAAATGATTCAGTGGATAAAAGCCGATGGGCAGTCAAACGATCCCGAATATTGTCAAGTAGTAAGACAGAGGTCACTTCGACACACAACCGTAGGATACACAGCTCGGTTTGAAGCATCAAAGCATTTTGAAGAATTCTCAGAAATCAGTATCAGTTAG 3606 41.74 MGGGRTRTRRKKQHFKRIHAFPCGKASFKDEHSLIGGPGFSRVVYCNNPEGFEASLLNYGGNYVKTSKYTIASFIPKSLFEQFRRVANLYFLLCALLSFTPLSPYTWVSNVLPLVVVIGVTMGKEALEDWKRAKQDMEMNNREVKVHLGDGNFVDTKWADLRVGDIVKVEKDEFFPADLILLSSSYEEAICYVETTNLDGETNLKLKNALEVSSNLHEDSSFHNFKAIIKCEDPNANLYSFVGSMDLEEQQYPLSPQQLLLRDSKLRNTDFIYGVVIFTGRDTKVIQNSTTPPSKRSKIERRMDKIVFFLFALLVLISIAGSIFFGVTTRDDIKNGRITRWYLRPESTTMYYNPKRAPVAAILQFLTSLMLFSYLIPISLYVSIEIVKVLQSAFINQDLHMYYEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGITEVERAFARRKESTLPHVTANKKVDDAHLNDEKPSIKGFNFKDERIMDGNWVKEPRADVIQKFLQLLAICHTALPEVDEETGRISYEAESPDESAFVIAAREFGFEFYERTQTSISLRELDRITVSKVERSYQILDILEFNSSRKRMSVIVRNSKGQLLLLCKGADSVMFERLSKSGREFEEETRVHVNEYADAGLRTLVLAYRDLEEEEFNKFHNEFTKAKNLVSTDREDVIDQLTESIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIVISSETPEGKALDKVEDDKSAAIKAFKASVIQQLSDARILLTSSSETAEALALIIDGKSLTYALEDDVKDLFMELAIGCASVICCRSSPKQKALVTRLVKVKTGHTTLAVGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFELYASFSGQSVYNDWYLALYNVFFTSLPVIALGVFDQDVSSRFCLKFPLLYQEGVQNVLFSWFRVIGWIFNGLLSAVIIFFFCIRVMEHQAFRSSGEVVGLEILGATMYTCVVWVVNCQMALSISYFTYIQHLFIWGSIILWYLFLLAYGAMDPNISTTAYQVFIEACAPAPSFWILTFLALVASLLPYFTYTSIQMRFFPMYHQMIQWIKADGQSNDPEYCQVVRQRSLRHTTVGYTARFEASKHFEEFSEISIS 1201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 953368 958860 - evm.model.ptg000005l.1368 HCH3g0149 540877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0149 1201 SFLD C1.7: P-type atpase like 410 919 - -
HCH3g0149 1201 CDD P-type_ATPase_APLT_Dnf-like 61 1028 - -
HCH3g0149 1201 PRINTS P-type cation-transporting ATPase superfamily signature 868 887 - -
HCH3g0149 1201 PRINTS P-type cation-transporting ATPase superfamily signature 428 442 - -
HCH3g0149 1201 FunFam Phospholipid-transporting ATPase 703 908 - -
HCH3g0149 1201 Pfam Phospholipid-translocating P-type ATPase C-terminal 896 1146 IPR032630 -
HCH3g0149 1201 ProSitePatterns E1-E2 ATPases phosphorylation site. 430 436 IPR018303 -
HCH3g0149 1201 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 493 704 IPR023299 GO:0000166(InterPro)
HCH3g0149 1201 FunFam Phospholipid-transporting ATPase 545 703 - -
HCH3g0149 1201 Pfam Cation transport ATPase (P-type) 525 631 - -
HCH3g0149 1201 FunFam Phospholipid-transporting ATPase 120 290 - -
HCH3g0149 1201 SFLD p-type atpase 410 919 IPR044492 -
HCH3g0149 1201 Gene3D - 551 703 IPR023299 GO:0000166(InterPro)
HCH3g0149 1201 Gene3D - 119 290 - -
HCH3g0149 1201 SUPERFAMILY HAD-like 423 923 IPR036412 -
HCH3g0149 1201 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1146 IPR023298 -
HCH3g0149 1201 Pfam Phospholipid-translocating ATPase N-terminal 44 110 IPR032631 -
HCH3g0149 1201 SUPERFAMILY Calcium ATPase, transduction domain A 147 287 IPR008250 -
HCH3g0149 1201 Gene3D - 704 908 IPR023214 -
HCH3g0149 1201 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 36 1150 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
HCH3g0149 1201 NCBIfam HAD-IC family P-type ATPase 834 950 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH3g0149 1201 NCBIfam phospholipid-translocating P-type ATPase 59 1153 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0299 HCH-Chr13:1991655 HCH3g0149 HCH-Chr3:953368 2.50E-189 dispersed
HCH13g0821 HCH-Chr13:8064648 HCH3g0149 HCH-Chr3:953368 0.00E+00 dispersed
HCH1g0979 HCH-Chr1:57918754 HCH3g0149 HCH-Chr3:953368 2.00E-271 dispersed
HCH3g0149 HCH-Chr3:953368 HCH9g0840 HCH-Chr9:5944635 1.90E-189 dispersed
HCH4g1491 HCH-Chr4:11291545 HCH3g0149 HCH-Chr3:953368 0.00E+00 transposed
HCH1g0823 HCH-Chr1:56880617 HCH3g0149 HCH-Chr3:953368 0.00E+00 wgd
HCH10g1223 HCH-Chr10:43417310 HCH3g0149 HCH-Chr3:953368 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0149 K01530 - csv:101205650 2095.47