Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0152 ATGGCTTCTCCCAAACCTCTACTTTTCCTCCTCCTACTACTTTCCTTCCAATGCTTTTCTGCAACAAGTACTGATTTCATAGTTGGTGGTGAAGATGGCTGGGCTGTCCCTAGCGCTAAAGACAGCGAAAAATACAACGAATGGGCATCTGAGAATAGGTTCAACGTTGACGACACCGTCCATTTCAAGTATAATAAGGATTCAGTGATGGTGGTGACTGAGGATGAGTACAAGCAGTGCAGTTCTCCGAGGCCAATCTTCTACTCCAACAATGGCGACACCGCTGTGGAACTCGATAGGCCAGGGCTATTCTATTTCATCAGTGGGGTTTCTGGGCATTGTGAGAAAGGCTTGAAGATGATAATCAAAGTTTTGGAACCTCATGGACCTCCTCAATCAGATGCTCCACCACCAAAGAGCAATGCAGGAGATTTGGTTTCTGTTTCACTTCCATTATTTCGAATGCTCATTGTCTCCTTTGCTTTTCTCTTCGTTTAG 498 44.98 MASPKPLLFLLLLLSFQCFSATSTDFIVGGEDGWAVPSAKDSEKYNEWASENRFNVDDTVHFKYNKDSVMVVTEDEYKQCSSPRPIFYSNNGDTAVELDRPGLFYFISGVSGHCEKGLKMIIKVLEPHGPPQSDAPPPKSNAGDLVSVSLPLFRMLIVSFAFLFV 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 978920 979513 - evm.model.ptg000005l.1365 HCH3g0152 540880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0152 165 FunFam Early nodulin-like protein 1 23 129 - -
HCH3g0152 165 SUPERFAMILY Cupredoxins 23 125 IPR008972 -
HCH3g0152 165 ProSiteProfiles Phytocyanin domain profile. 24 126 IPR003245 GO:0009055(InterPro)
HCH3g0152 165 Gene3D - 22 128 IPR008972 -
HCH3g0152 165 CDD OsENODL1_like 24 125 IPR041846 -
HCH3g0152 165 PANTHER BLUE COPPER PROTEIN 16 130 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
HCH3g0152 165 Pfam Plastocyanin-like domain 39 117 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0152 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0407 HCH-Chr1:52072722 HCH3g0152 HCH-Chr3:978920 1.40E-35 dispersed
HCH2g0033 HCH-Chr2:2205453 HCH3g0152 HCH-Chr3:978920 4.50E-24 dispersed
HCH3g0152 HCH-Chr3:978920 HCH6g0775 HCH-Chr6:42531118 2.90E-19 dispersed
HCH3g0152 HCH-Chr3:978920 HCH2g0836 HCH-Chr2:51857593 4.70E-22 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0836 . 9 151 Phytocyanin Superfamily AT5G53870 53.1 3.0e-37 152.9
HCH3g0152 . 5 141 Phytocyanin Superfamily AT1G48940 57.6 1.4e-40 162.9
HCH12g1062 . 15 130 Phytocyanin Superfamily AT4G27520 61.2 3.8e-37 152.5
HCH9g0266 . 18 132 Phytocyanin Superfamily AT3G01070 63.6 2.4e-37 152.1
HCH4g0475 . 1 171 Phytocyanin Superfamily AT2G25060 55.5 1.2e-47 186.4
HCH4g0475 . 8 140 Phytocyanin Superfamily AT4G30590 50.4 1.0e-36 150.2
HCH9g0266 . 34 181 Phytocyanin Superfamily AT5G15350 54.7 1.1e-45 179.9
HCH4g0475 . 4 170 Phytocyanin Superfamily AT4G31840 53.8 3.0e-46 181.8
HCH3g0152 . 1 133 Phytocyanin Superfamily AT3G18590 57.0 5.7e-40 161.0
HCH4g1422 . 30 132 Phytocyanin Superfamily AT1G79800 66.0 1.4e-38 156.4
HCH2g0836 . 9 151 Phytocyanin Superfamily AT5G53870 53.1 3.0e-37 152.9
HCH12g1062 . 15 130 Phytocyanin Superfamily AT4G27520 61.2 3.8e-37 152.5
HCH2g0836 . 12 155 Phytocyanin Superfamily AT4G28365 52.8 2.8e-37 152.1
HCH3g0152 . 1 133 Phytocyanin Superfamily AT3G18590 57.0 5.7e-40 161.0
HCH3g0152 . 5 141 Phytocyanin Superfamily AT1G48940 57.6 1.4e-40 162.9
HCH4g1422 . 30 132 Phytocyanin Superfamily AT1G79800 66.0 1.4e-38 156.4
HCH6g1178 . 17 174 Phytocyanin Superfamily AT1G64640 50.9 6.0e-37 151.0
HCH4g0475 . 8 140 Phytocyanin Superfamily AT4G30590 50.4 1.0e-36 150.2
HCH4g0475 . 10 170 Phytocyanin Superfamily AT5G25090 53.8 1.4e-41 166.4
HCH4g0475 . 1 171 Phytocyanin Superfamily AT2G25060 55.5 1.2e-47 186.4
HCH4g0475 . 4 170 Phytocyanin Superfamily AT4G31840 53.8 3.0e-46 181.8
HCH9g0266 . 18 132 Phytocyanin Superfamily AT3G01070 63.6 2.4e-37 152.1
HCH9g0266 . 34 181 Phytocyanin Superfamily AT5G15350 54.7 1.1e-45 179.9
HCH2g1317 . 35 219 Phytocyanin Superfamily AT1G08500 60.8 1.1e-61 233.4
HCH8g0501 . 27 153 Phytocyanin Superfamily AT2G27035 55.1 6.1e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000973 5 4 1 1 2 2 4 2 2 3 3 2 3 3 3 3 2 2 5 3 2 4 3 3 2 3 2 3 2 3 82