Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0152 ATGGCTTCTCCCAAACCTCTACTTTTCCTCCTCCTACTACTTTCCTTCCAATGCTTTTCTGCAACAAGTACTGATTTCATAGTTGGTGGTGAAGATGGCTGGGCTGTCCCTAGCGCTAAAGACAGCGAAAAATACAACGAATGGGCATCTGAGAATAGGTTCAACGTTGACGACACCGTCCATTTCAAGTATAATAAGGATTCAGTGATGGTGGTGACTGAGGATGAGTACAAGCAGTGCAGTTCTCCGAGGCCAATCTTCTACTCCAACAATGGCGACACCGCTGTGGAACTCGATAGGCCAGGGCTATTCTATTTCATCAGTGGGGTTTCTGGGCATTGTGAGAAAGGCTTGAAGATGATAATCAAAGTTTTGGAACCTCATGGACCTCCTCAATCAGATGCTCCACCACCAAAGAGCAATGCAGGAGATTTGGTTTCTGTTTCACTTCCATTATTTCGAATGCTCATTGTCTCCTTTGCTTTTCTCTTCGTTTAG 498 44.98 MASPKPLLFLLLLLSFQCFSATSTDFIVGGEDGWAVPSAKDSEKYNEWASENRFNVDDTVHFKYNKDSVMVVTEDEYKQCSSPRPIFYSNNGDTAVELDRPGLFYFISGVSGHCEKGLKMIIKVLEPHGPPQSDAPPPKSNAGDLVSVSLPLFRMLIVSFAFLFV 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 978920 979513 - evm.model.ptg000005l.1365 HCH3g0152 540880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0152 165 FunFam Early nodulin-like protein 1 23 129 - -
HCH3g0152 165 SUPERFAMILY Cupredoxins 23 125 IPR008972 -
HCH3g0152 165 ProSiteProfiles Phytocyanin domain profile. 24 126 IPR003245 GO:0009055(InterPro)
HCH3g0152 165 Gene3D - 22 128 IPR008972 -
HCH3g0152 165 CDD OsENODL1_like 24 125 IPR041846 -
HCH3g0152 165 PANTHER BLUE COPPER PROTEIN 16 130 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
HCH3g0152 165 Pfam Plastocyanin-like domain 39 117 IPR003245 GO:0009055(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0407 HCH-Chr1:52072722 HCH3g0152 HCH-Chr3:978920 1.40E-35 dispersed
HCH2g0033 HCH-Chr2:2205453 HCH3g0152 HCH-Chr3:978920 4.50E-24 dispersed
HCH3g0152 HCH-Chr3:978920 HCH6g0775 HCH-Chr6:42531118 2.90E-19 dispersed
HCH3g0152 HCH-Chr3:978920 HCH2g0836 HCH-Chr2:51857593 4.70E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0152 - - - 0.0