Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0174 ATGGCTGAATTCACAGCAAACCTTCAAAACCTTAAGCCATCTTTTCCTTTTGCAGATATGGATTCCAATATAGACTTCATTGGTCAAATTGGAGGTCTAAATCCAAGTGTGCAACATACTTCCAATATGAATCTTCTAGACAACATGCCTGTTTTGTTCAATGACAATTGCTTTCGATCGCCCGCAAAATTCCCGGAAAACTGGGGAGAGAATTTTCCAGAAGCATTCTATCAAGGAACTCAGATTGCAGCATCTCCTGTTGAGGCTACAAATCCATCTGGAGATGAGCTCCATGGAAGCAAAAAGAGAAAGTTAGAAACAGATGTATCTGAAAGTAGCTCTGGCAACTCATCCCCTCAAGTATCTGAAGCTGGGACCAAGAGTAAAAATAGTTTAGGAAAAGGAAAGAGATCAAGAAAAGGCAATGAAAAGGAAGAAGAGAAACCAAGGGAAGTGGTTCATGTCAGAGCCAAAAGAGGTCAAGCAACAGACAGTCACAGTGTAGCAGAAAGGATTAGAAGAGGAAAAATCAATGAGAGATTGAGATGCTTGCAAGATATTGTCCCTGGATGTTACAAGACCATGGGCATGGCAGTCATGTTGGATGAGATAATTAACTATGTCCAATCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTTTTATGACTTCAACTCAGAGTCAGATGCTGCAGAAAAAATTAAGATAACAGAGGGAAATGGAGGATTGCTGCTTGGTCCCTTTGACTTGAGCTTTGGTCCTTATTCCACATTGCCATACAACACCATATGA 813 40.59 MAEFTANLQNLKPSFPFADMDSNIDFIGQIGGLNPSVQHTSNMNLLDNMPVLFNDNCFRSPAKFPENWGENFPEAFYQGTQIAASPVEATNPSGDELHGSKKRKLETDVSESSSGNSSPQVSEAGTKSKNSLGKGKRSRKGNEKEEEKPREVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSFYDFNSESDAAEKIKITEGNGGLLLGPFDLSFGPYSTLPYNTI 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1135336 1136808 - evm.model.ptg000005l.1343 HCH3g0174 540902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0174 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 229 IPR036638 GO:0046983(InterPro)
HCH3g0174 270 MobiDBLite consensus disorder prediction 136 168 - -
HCH3g0174 270 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 91 235 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
HCH3g0174 270 Gene3D - 158 229 IPR036638 GO:0046983(InterPro)
HCH3g0174 270 SMART finulus 167 217 IPR011598 GO:0046983(InterPro)
HCH3g0174 270 Pfam Helix-loop-helix DNA-binding domain 165 212 IPR011598 GO:0046983(InterPro)
HCH3g0174 270 MobiDBLite consensus disorder prediction 95 109 - -
HCH3g0174 270 FunFam transcription factor BEE 3-like 158 229 - -
HCH3g0174 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 211 IPR011598 GO:0046983(InterPro)
HCH3g0174 270 MobiDBLite consensus disorder prediction 110 131 - -
HCH3g0174 270 CDD bHLH_AtBPE_like 151 236 - -
HCH3g0174 270 MobiDBLite consensus disorder prediction 87 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0174 HCH-Chr3:1135336 HCH7g0939 HCH-Chr7:37872082 7.70E-30 dispersed
HCH3g0174 HCH-Chr3:1135336 HCH8g1163 HCH-Chr8:47231272 8.70E-66 wgd
HCH3g0174 HCH-Chr3:1135336 HCH9g0370 HCH-Chr9:2337266 1.10E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33290 PF00010 HLH 5.20E-05 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0174 - - - 0.0