Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0177 ATGGGGATTTTGTTATCTCTCTGTGGTTGCTTGAAGAAGAGATTAAGAGGAGGTAAATCAGCCGATGCCGATCAAGAAGACGATGGAGATGAATCTTCAGACATTTTCTTTGATCTTCGTACTTTGCAAGTTGCTACCAATTTCTTCTCTGATTTGAATAAGCTTGGTCATGGCGGATTTGGGCCGGTTTATAAGGGATTGATGCCGAATGGTGAACTAGTAGCAGTCAAGAAGCTATCAGTAGATTCAAGACAAGGAGTGAGGCAATTTAGTAATGAAGTGAAACTTCTTCTGAGAACTCAGCATAGAAATTTGGTTATTTTATTGGGCTGTTGTATTGAAGGACCTGAAAAGATGCTTGTATATGAGTACCTACCAAATAGAAGCCTTGATTACTTTATTTTTGATAAAAAGAAATCTCCATCCCTCGATTGGACGACACGGGTTCATATAATTAACGGTGTTGTGAGAGGTCTACTCTACTTACATGAAGAGGCTCCCTCCAGAATTATTCACAGAGATATCAAAGCTAGTAACATATTACTAGATGAGCAATTGAAGCCAAAAATCTCAGATTTTGGTTTAGCGAGACTCTTTCCTGGGGAAGACACTCATTTGAATACATTTAAGATTGCTGGTACTCACGGTTATATGGCACCTGAATATGCGATCCATGGATACCTATCCGTGAAGAGTGATGTTTTCAGTTTTGGCATCTTGGTTCTGGAAATTGTTAGTGGGAGAAGAAATAATGAAAAGCGTCTCAGTGTAGAGAAGGTTGACCTCTTGAGTTATGCGTGGCTCCTTTTTCAACAAGGGAAGATTTTAGAATTAGTTGACAAAAGCCTTGTAAAGTACAATGCAGATGAGGCAGCTATGTGCTGTCAGCTGGGATTGTTATGTTGCCAAGCTAGTGTTACAGAAAGGCCTGATATGACTGCTATTCATCTCATGCTTTCCAGTGACTCATTTACATTGCCACGACCTGGTAAACCAGGACTTCAAGGTCGAGGAGGACGGTGGACGACTACGACAACTTCAGCTTCCGCCAATACATATACAAGTAGTAGCACGCAGACCGGCGTTACCAAACCTTCTGCTGGTAGTAGTTTCATGGAGGATTATTCAAGAAATTCCATGTCTATTTCTTCTACTGATGAGGGTAGATGA 1170 40.77 MGILLSLCGCLKKRLRGGKSADADQEDDGDESSDIFFDLRTLQVATNFFSDLNKLGHGGFGPVYKGLMPNGELVAVKKLSVDSRQGVRQFSNEVKLLLRTQHRNLVILLGCCIEGPEKMLVYEYLPNRSLDYFIFDKKKSPSLDWTTRVHIINGVVRGLLYLHEEAPSRIIHRDIKASNILLDEQLKPKISDFGLARLFPGEDTHLNTFKIAGTHGYMAPEYAIHGYLSVKSDVFSFGILVLEIVSGRRNNEKRLSVEKVDLLSYAWLLFQQGKILELVDKSLVKYNADEAAMCCQLGLLCCQASVTERPDMTAIHLMLSSDSFTLPRPGKPGLQGRGGRWTTTTTSASANTYTSSSTQTGVTKPSAGSSFMEDYSRNSMSISSTDEGR 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1151830 1157960 - evm.model.ptg000005l.1340 HCH3g0177 540905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0177 389 FunFam Cysteine-rich receptor-like protein kinase 41 125 325 - -
HCH3g0177 389 SUPERFAMILY Protein kinase-like (PK-like) 34 319 IPR011009 -
HCH3g0177 389 ProSiteProfiles Protein kinase domain profile. 49 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0177 389 SMART serkin_6 49 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0177 389 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 333 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH3g0177 389 Pfam Protein kinase domain 50 252 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0177 389 Gene3D Phosphorylase Kinase; domain 1 14 124 - -
HCH3g0177 389 CDD STKc_IRAK 55 319 - -
HCH3g0177 389 Gene3D Transferase(Phosphotransferase) domain 1 125 325 - -
HCH3g0177 389 MobiDBLite consensus disorder prediction 338 389 - -
HCH3g0177 389 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 23 124 - -
HCH3g0177 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0177 389 MobiDBLite consensus disorder prediction 327 389 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0177 HCH-Chr3:1151830 HCH7g0202 HCH-Chr7:1396888 2.60E-95 dispersed
HCH3g0177 HCH-Chr3:1151830 HCH3g0186 HCH-Chr3:1194566 5.20E-45 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81371 PF00069 Pkinase 9.70E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0177 - - - 0.0