Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0186 ATGAAGATCCATCTCTCATTAAACTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTCATTTCTCTTGTTTCAATTCTCACCATGTTTCAGCGAAGACGCTTTCGATGAATTCAAAGCGTGCGGTCTCGTTTACAATTGTGGAGAATTAGTAAACATCTCATACCCCTTTTGGGGTAACGAACGCCCAGCATATTGTGGAGCTCGAGAATTCAAGCTGAACTGTACAGAAAACAAAACCACAATGATCGAAATCGATTCTCATGAATATATTGTTCTGGAAATCAATCAGACGAATCAGAGAATGAAAATCGCCAGAGCGGACTTATTCAACGATTACTGCCCTGAAACGATAATCGAAACAGCCACTTTGAATTACGATCTGTATGAGTATTTACCAAACGATCAGCATATATCTATATGGTACGATTGCCAGCTTCTACCCGGCGAAGATTTCACGGAAAATAACAGTTTTATATGCGATTCGAACGGGAGAAACTGGGCGAATGCAAATTACTTTTTTAAAGAACCGATGCCGGCGGATTTGATTCAATTATTGAAGAGAGAGTGTAGAATGAATATTGAAGTGACGGTAACAGTGGAAGAACTGGAAAAATACAAAGATAACAAAACGGCGTCGTTGGAGAACGCTCTGAAACAAGGGTTTGATGTTGGATATAAAAATCTGAATACAGTTGCTTGCCATGAATGCAAAGAAAGTGGAGGCAACTGTGGATCAAATCAAACTTATTTGTTTTACTGCATTTGTCGAAACCGAAATGCCCATCCTTACCTCTGCACGACTAAAGCGCGTCCCAACAGGCGGATAAAAGCTCTCATAGCTCTAACAACTTCAGTTGGTCTCGTTGGGATCATGATCATATTCATCTGCTACATAAGGAAAATAATGTTGAATAAAGAGGAAACCGAGAAAATTATTAGGAAATATGCCACTCAGACGCCAAAGCGATATAGTTATTCAAAAGTGAAGAAAATTACAAGTTCATTCAAGAACAAACTTGGTCAAGGAGGATTTAGCATTGTCTACGAAGGAAAGCTACCAGACGGTCGCGATGTCGCCGTGAAACTCTTGAATGAATACAAGCAAAGCGGCCATGATTTTATCAATGAAGTTGTAAGCATCGCTCAAACTTCACACGTAAATATAGTCACTCTTTTAGGTTTTTGTTACGAGCGGCGCAAAAGAGCTTTGATTTATGAGTATATGCCCAAAGGGTCACTGGATAAATATACATCTCACAGAGTACACGCTCCCTTGGATTGGAATACACGGCATAGTATCGCTGTCGGCATCGCTCGAGGCTTGGAATACTTGCATCGCGGTTGCAACACGAAGATTTTCCATTTTGATATCAAGCCACACAACATTCTTTTAGACAACACCTTGTGCCCCAAAATATCAGATTTTGGACTTGCAAAGCAATGCAAGGCAAATGAAAGCCATGTAACCATGACAGGTGCAAAGGGAACACCAGGATTCATAGCTCCTGAACAAATATTCAGGAATTTTGGTAAAGTTTCTCACAAATCTGATGTTTATAGCTATGGAATGTTGGTTCTTGATATGATTGGTGAAAGAAAGAATCCCAATCCTAATCAAGGAATTTCTGAAAGCAGTGATGAATATTTTCCTGATTGGATATATGAGGATCTTACAAAGAGTGAAGATGGAGATTTTCAGTGGGGTAACACAGAGGAAGAAGAAGGAGTTGCAAGAAAGATGATTATAGTGGGATTGAATTGCATTCAAACATTGCCAGATGAAAGGCCATCAATGACTGATGTGGTTTCAATGTTGGAAGCAAGTCTTGATTCCTTACAAATTCCACCAAAACCAACCTTGTCTTTACCTCCTATGCTGCCTCAGCCTTCCTCTTCATCAACCTCATAA 1908 39.68 MKIHLSLNFFFFFFFFFISFLLFQFSPCFSEDAFDEFKACGLVYNCGELVNISYPFWGNERPAYCGAREFKLNCTENKTTMIEIDSHEYIVLEINQTNQRMKIARADLFNDYCPETIIETATLNYDLYEYLPNDQHISIWYDCQLLPGEDFTENNSFICDSNGRNWANANYFFKEPMPADLIQLLKRECRMNIEVTVTVEELEKYKDNKTASLENALKQGFDVGYKNLNTVACHECKESGGNCGSNQTYLFYCICRNRNAHPYLCTTKARPNRRIKALIALTTSVGLVGIMIIFICYIRKIMLNKEETEKIIRKYATQTPKRYSYSKVKKITSSFKNKLGQGGFSIVYEGKLPDGRDVAVKLLNEYKQSGHDFINEVVSIAQTSHVNIVTLLGFCYERRKRALIYEYMPKGSLDKYTSHRVHAPLDWNTRHSIAVGIARGLEYLHRGCNTKIFHFDIKPHNILLDNTLCPKISDFGLAKQCKANESHVTMTGAKGTPGFIAPEQIFRNFGKVSHKSDVYSYGMLVLDMIGERKNPNPNQGISESSDEYFPDWIYEDLTKSEDGDFQWGNTEEEEGVARKMIIVGLNCIQTLPDERPSMTDVVSMLEASLDSLQIPPKPTLSLPPMLPQPSSSSTS 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1194566 1197003 - evm.model.ptg000005l.1331 HCH3g0186 540914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0186 635 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524(InterPro)
HCH3g0186 635 FunFam PR5-like receptor kinase 408 617 - -
HCH3g0186 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0186 635 Gene3D Transferase(Phosphotransferase) domain 1 408 614 - -
HCH3g0186 635 SMART serkin_6 333 605 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0186 635 SUPERFAMILY Protein kinase-like (PK-like) 313 606 IPR011009 -
HCH3g0186 635 Pfam Wall-associated receptor kinase galacturonan-binding 45 105 IPR025287 GO:0030247(InterPro)
HCH3g0186 635 Gene3D Phosphorylase Kinase; domain 1 304 407 - -
HCH3g0186 635 FunFam serine/threonine-protein kinase PBS1-like 301 407 - -
HCH3g0186 635 MobiDBLite consensus disorder prediction 614 635 - -
HCH3g0186 635 PANTHER RUST RESISTANCE KINASE LR10-RELATED 247 625 IPR045874 GO:0004672(InterPro)
HCH3g0186 635 Pfam Protein kinase domain 335 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0186 635 Coils Coil 199 219 - -
HCH3g0186 635 Pfam Wall-associated receptor kinase C-terminal 171 257 IPR032872 -
HCH3g0186 635 ProSiteProfiles Protein kinase domain profile. 333 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0186 HCH-Chr3:1194566 HCH4g0439 HCH-Chr4:2869914 1.30E-59 dispersed
HCH3g0177 HCH-Chr3:1151830 HCH3g0186 HCH-Chr3:1194566 5.20E-45 proximal
HCH3g0186 HCH-Chr3:1194566 HCH3g0187 HCH-Chr3:1197687 9.50E-180 tandem
HCH10g0993 HCH-Chr10:22734645 HCH3g0186 HCH-Chr3:1194566 2.20E-132 transposed
HCH3g0186 HCH-Chr3:1194566 HCH9g0381 HCH-Chr9:2423616 4.30E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81372 PF00069 Pkinase 1.80E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0186 - - - 0.0