Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0203 ATGAAGAACCTTCTCAAGAAGTTGCATATCATGTCTACTAGTCAATCAGAAGATACAGCAGAAGGGTCTACTTCATCAAGGGGCAGTAAATCAATCGACGTTTCGTTGTCTGATAGGCTGCAATCTCGGCCTCGGTCGACTCATTTTAATCCAGAGCATAAACCCTTCTCAGGGATATCTGGTTGGTTGAACTCTGTTGCTAATAGAAATAGCCCCAGCCCTCCATCATCTTCCAATGTCTCTGTAGGAGAGAGAATGGAACCATCTGATTCAGTAACTAGCCGAGACGCTGCCATGGACATATCAAGGCCTGATTCAGGATCTAGTAATTCAAGGGATCCTGATATAGAGGAAGAGTATCAGATACAGTTGGCTTTGGAGTTGAGTGCCAGAGAGGATCCTGAGGCTGCTCAGATTGAGGCAGTGAAACAGATCAGTTTGGGCTCTTGTGATCCTGATAACACTCCAGCTGAAGTTATTGCCTTCAGATACTGGAATTACAATTCTCTTAGCTATGATGATAAGATCATGGATGGCTTCTATGACCTGTATGGAGTCTACACTGAGTCCACCTCAGAAAGAATGCCTTCCCTGGTAGATCTGCAAGGAACTCCAATGTCTGATAGTGTCACTTGGGAAGCAGTTTTGATCAATAAAGCTGCTGATGCCAACTTATTGAAACTTGAACAGACGGCATTGGAGATGGCCATCACGATGAGGTCGGAATCTCCAATTTCTGTAGATAACTATTTGGTGCGAAAGCTTGCTGTTTTAGTTTCTGATCATATGGGAGGACCAGTAGGGGATCCTGAAAAAATGTTGAGGAAATGGAAAAATCTAAGTTACAGCTTGAAGGCAACCCTTGGTAGCATGGTTTTGCCTCTTGGCTCCCTCACAGTAGGGTTGGCTCGCCATCGTGCATTGTTATTCAAGCTTTTGGCCGATGGCGTGGATATCCCTTGTAGGTTGGTGAAAGGACCACAGTACACTGGTTCTGATGATGGGGCAATGAACTTCATTAAGATTGATGATGGAAGGGAGTACATTGTGGATTTAATGGCAGATCCCGGCACACTTATTCCATCTGATGCAGCTGGATCACACATAGAATATGATGAATCTTTGTTTTCAGCCAGTCCCTTTTCTAGAGATGTCGATTCCTCTCGAGCAGCCTCTTCGAGCAGTGGGGTTGGCAGTTCACTGGAGGAAAATTCGGATTTTGGGACATCGGATAGGAGACCAAGGTCTAGGAATTCTGGTGTCACAGGGAAGGAGTATGATCCTCCCAATGCCGAGAAAGGGTTGTCGCGTGATTATGTAAGCAGACCTAATTATCCTGGTGTCCATGCAAGATCACCTTCTTGGACTGAAGGTGTTAGCTCACCTGCCGCCCGCAGAATGAAAGTAAAGGATGTTTCACAGTACATGATTGATGCTGCGAAAGAGAATCCACGCTTGGCTCAGAAGCTTCATGACGTGTTGCTTGAAAGTGGTGTTGTTGCTCCCCCTAACTTGTTTACTGAAGTATACCCAGATCAAATAGATGTTGAGTCCAGGTCCACAACTGAAGACATGGATCAAAGCAGAAAGGCGACCGGTCTCCGAGAAAGTTTGGATAAGAATGATCTTCGTCCAGTGAACTTTTTGCCTCCCTTGCCTCAGCACAGACTACATTCCAGAGCAAGCCCCACCCATGGCCAACAACAGCTTGATTCGAGAGAAGCAGCTGGACCAATTATTGCCTTGCCATTTGAAGTAACTTCAGTGAAATATGGGAGAAATGTACCTGTTGCTGCTGCAGCCGCCGCGGCCGCCGCTGTTGTTGCATCTTCAATGGTAGTGGCTGCAGCAAAGAGTACTGATGCAAATCTTGAAATTCCTGTAGCTGCTGCTGCCACTGCCACTGCTGCTGCAGTGGTTGCAACAACTGCAGCAGTCAGCAAGCAATATGAGCAGGTTGGGGCAGATTGTGCTGGTTATGATCAGCGGGGCAGTGGAGATAGGGAACATGAAGCTTTAGGAGCAAATTCAGAGGGTGAACGGATATCAGATCGATCTGCAGGTAATGAAAGCACAAAATCCGATGTTACACTCGATGATGACGTTGCAGAATGCGAGATCCCATGGGAAGAAATCTCCTTGGGCGACCGTATCGGACTCGGATCATATGGGGAGGTCTATCGTGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAAGTTTCTAGACCAGGACTTTTCTGGTGAAACACTAGAAGAATTCAAAAGTGAGGTTCGAATAATGAAAAGGCTCCGGCATCCCAATGTTGTTCTCTTCATGGGAGCCGTGACACGTGCTCCCAATCTTTCAATTGTTACAGAATTTCTTCCCAGGGGTAGCTTGTACAGGTTAATTCACCGACCCAATAATCAGTTAGATGAGCGAAAGCGATTGAGGATGGCCCTTGATGCAGCTCGGGGAATGAATTATTTGCACAATTGCACCCCTGTTATCGTACATCGTGATTTGAAGTCCCCCAATCTTCTTGTTGATAAAAATTGGGTTGTCAAGGTATGTGATTTCGGTTTATCAAAAATGAAGCATAGCACATTTCTTTCCTCAAGGTCAACTGCTGGAACAGCTGAGTGGATGGCTCCAGAAGTACTGAGAAATGAACCTTCAGATGAAAAGTGTGATGTTTTTAGTTATGGAGTCATACTATGGGAGCTTTCTACATTGCAACAACCATGGGGTGGAATGAACCCAATGCAAGTTGTTGGTGCAGTTGGATTTCAGCATCGCCGTCTTGACATCCCAGATAATATGGATCCCGTCATTGCCGATATTATCAGGAAATGCTGGCAAACAGATCCAAGATTGAGACCTACGTTTGCCGAAATCATGGCCGCTCTAAAGCCATTGCAGAAGCCACCAGCCTCTTCCCAGGTATCGAGACTAAATGCTTCTACCGTTGGTGGCCGCCAGAAGGCTCAGTTGTTGCATGCTGCTGAAGATCCATCAGGCTAG 3006 46.14 MKNLLKKLHIMSTSQSEDTAEGSTSSRGSKSIDVSLSDRLQSRPRSTHFNPEHKPFSGISGWLNSVANRNSPSPPSSSNVSVGERMEPSDSVTSRDAAMDISRPDSGSSNSRDPDIEEEYQIQLALELSAREDPEAAQIEAVKQISLGSCDPDNTPAEVIAFRYWNYNSLSYDDKIMDGFYDLYGVYTESTSERMPSLVDLQGTPMSDSVTWEAVLINKAADANLLKLEQTALEMAITMRSESPISVDNYLVRKLAVLVSDHMGGPVGDPEKMLRKWKNLSYSLKATLGSMVLPLGSLTVGLARHRALLFKLLADGVDIPCRLVKGPQYTGSDDGAMNFIKIDDGREYIVDLMADPGTLIPSDAAGSHIEYDESLFSASPFSRDVDSSRAASSSSGVGSSLEENSDFGTSDRRPRSRNSGVTGKEYDPPNAEKGLSRDYVSRPNYPGVHARSPSWTEGVSSPAARRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEVYPDQIDVESRSTTEDMDQSRKATGLRESLDKNDLRPVNFLPPLPQHRLHSRASPTHGQQQLDSREAAGPIIALPFEVTSVKYGRNVPVAAAAAAAAAVVASSMVVAAAKSTDANLEIPVAAAATATAAAVVATTAAVSKQYEQVGADCAGYDQRGSGDREHEALGANSEGERISDRSAGNESTKSDVTLDDDVAECEIPWEEISLGDRIGLGSYGEVYRGDWHGTEVAVKKFLDQDFSGETLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPNLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVFSYGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDNMDPVIADIIRKCWQTDPRLRPTFAEIMAALKPLQKPPASSQVSRLNASTVGGRQKAQLLHAAEDPSG 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1295055 1301881 + evm.model.ptg000005l.1314 HCH3g0203 540931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0203 1001 MobiDBLite consensus disorder prediction 517 545 - -
HCH3g0203 1001 Pfam Ethylene-responsive protein kinase Le-CTR1 157 360 - -
HCH3g0203 1001 MobiDBLite consensus disorder prediction 661 699 - -
HCH3g0203 1001 FunFam Serine/threonine-protein kinase isoform 1 703 790 - -
HCH3g0203 1001 MobiDBLite consensus disorder prediction 662 699 - -
HCH3g0203 1001 MobiDBLite consensus disorder prediction 517 542 - -
HCH3g0203 1001 Gene3D Transferase(Phosphotransferase) domain 1 791 975 - -
HCH3g0203 1001 MobiDBLite consensus disorder prediction 970 987 - -
HCH3g0203 1001 MobiDBLite consensus disorder prediction 387 464 - -
HCH3g0203 1001 ProSitePatterns Protein kinases ATP-binding region signature. 718 740 IPR017441 GO:0005524(InterPro)
HCH3g0203 1001 MobiDBLite consensus disorder prediction 406 420 - -
HCH3g0203 1001 PRINTS Tyrosine kinase catalytic domain signature 891 913 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0203 1001 PRINTS Tyrosine kinase catalytic domain signature 935 957 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0203 1001 PRINTS Tyrosine kinase catalytic domain signature 825 843 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0203 1001 PRINTS Tyrosine kinase catalytic domain signature 786 799 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0203 1001 PRINTS Tyrosine kinase catalytic domain signature 872 882 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0203 1001 SMART serkin_6 712 967 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0203 1001 ProSiteProfiles Protein kinase domain profile. 712 968 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0203 1001 MobiDBLite consensus disorder prediction 1 116 - -
HCH3g0203 1001 FunFam Serine/threonine-protein kinase CTR1 791 974 - -
HCH3g0203 1001 MobiDBLite consensus disorder prediction 387 405 - -
HCH3g0203 1001 SUPERFAMILY Protein kinase-like (PK-like) 697 962 IPR011009 -
HCH3g0203 1001 CDD STKc_MAP3K-like 718 964 - -
HCH3g0203 1001 Pfam Protein tyrosine and serine/threonine kinase 713 964 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0203 1001 MobiDBLite consensus disorder prediction 61 88 - -
HCH3g0203 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0203 1001 PANTHER SERINE-THREONINE PROTEIN KINASE 95 965 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH3g0203 1001 MobiDBLite consensus disorder prediction 969 1001 - -
HCH3g0203 1001 MobiDBLite consensus disorder prediction 8 44 - -
HCH3g0203 1001 Gene3D Phosphorylase Kinase; domain 1 705 789 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0507 HCH-Chr12:2986428 HCH3g0203 HCH-Chr3:1295055 1.60E-194 dispersed
HCH12g0705 HCH-Chr12:4322882 HCH3g0203 HCH-Chr3:1295055 1.90E-123 dispersed
HCH3g0203 HCH-Chr3:1295055 HCH8g0166 HCH-Chr8:6185226 3.60E-173 dispersed
HCH3g0203 HCH-Chr3:1295055 HCH11g0373 HCH-Chr11:3504491 3.00E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81374 PF07714 PK_Tyr_Ser-Thr 1.70E-66 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0203 - - - 0.0