Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0220 ATGAAAATGAAAACCCAGATGCAGTTTCCATTAATTCTTAGTTTTATTCTCCTTTTTCTTCACACTGCAAAACCAGATCTTGCTTCTGATAGAACAGCTCTTTTAGCACTTCGTTCTGCCGTTGGTGGAAGAACCACTCGTCTTTGGAATTCCACTGATCAAAATACATGTTCTTGGCCGGGAATTCAATGCCAAGATAATCGTGTTACTGTTATTCGTCTCCCTGCTTCTGCTCTTTCCGGCCAATTACCTGCCGGAATTTTTAGTAACTTAACACGTCTCCGTACACTTAGTCTTAGGCTTAATGCATTGTCTGGTCCTTTGCCTTCAGATCTCAAAGCTTGCATTAATCTTCGTAATCTTTATTTGCAAGGTAATAGATTTTCTGGTAATTTGCCTGATTTTGTGTTCCTGCTTCATGACCTTGTTCGTCTTAATTTAGCTGCTAATAATTTTTCTGGTGAGATCTCTCCGGGTTTCAATAATTTGACCCGGCTCAGGACTTTGTTTCTTGAGAATAATCACCTTTCTGGGGTTATTCCTGATTTGAAGATGGGTGATTTGGATCAGTTTAATGTTTCTAATAATCGGTTAAATGGGTCGGTCCCGGCGAGTTTGCGGTCATTTCCTTCGAGTTCTTTTTCGGGGAATTTGTTATGTGGGAGTCCTCTTGAGTCTTGCTCTGGAGATATTACTGTGCCTGCGGGAGAGGGTAGGGATAATGGTGGTGTTGGAGTTAAGAAAAAGAAGATTTCTGGGGGTGCTATTGCTGGGATTGTGATTGGATCTGTGGTTGGTTTTGTGTTGTTACTGTTGGTTTTGATGTTTTTGTGTCGAAAGAAGAGTTCGAAGAAGACAAGTTCGGTTGATGTTGCTACGGTGAAGCATCCTGAAGTGGAAATTCAGGATGGAAAGGGGGTTGTTGAGGTTGAAAATGGTGGATATGGGAATGGGAACGGGAATGGTTTTTCTGTGGCGGCTGCAGCAGCTACTGCTATGACTGGGAATGGAAAGGGGGATGTGAATGGTAATGGTGGTGCTGGGGCTAAAAAGTTGGTGTTTTTCGGTAATGCGGCGAGAGTGTTTGATTTGGAGGATTTGTTGAGAGCTTCGGCGGAAGTGTTGGGGAAAGGGACTTTTGGGACTGCTTACAAAGCTGTTTTGGAGCTTGGTATTGTGGTGGCTGTGAAGAGGTTGAAGGATGTGACGATATCTGAGAGGGAATTCAGAGAGAAGATCGAGGCTGTTGGATCTATGGATCATGAAAATCTTGTCCCTCTCAGGGCTTACTATTTCAGCAGGGATGAGAAGCTTCTTGTTTATGATTACATGCCCATGGGAAGCTTATCTGCTCTTTTGCATGGAAATAAAGGAGCTGGTAGGACTCCATTGAATTGGGAAATCAGGTCTGGAATTGCCCTTGGAGCGGCTCGTGGCATTGAATATCTACATTCTCAAGGCCCTAATGTCTCTCATGGGAATGTAAAATCATCCAATATCCTTCTAACCAAATCCTATGATGCCCGAGTCTCTGATTTTGGTTTAGCACATCTAGTTGGACCACCTTCCACTCCCAACAGAGTCGCTGGATATCGAGCTCCAGAGGTCACCGATCCTCGTAAAGTATCCCAGAAGGCTGATGTCTATAGCTTCGGTGTACTGCTTTTAGAGCTCTTGACAGGGAAAGCTCCAACTCACGCCCTTTTAAACGAGGAAGGAGTCGACTTACCGAGATGGGTACAATCAGTTGTTCGAGAGGAGTGGACTTCAGAAGTTTTTGATCTCGAGCTTCTCAGGTACCAAAATGTCGAGGAGGAGATGGTTCAATTGTTGCAGCTTGCGGTTGATTGTGCAGCTCAGTATCCTGATAAGCGTCCTTCAATGTATGAAGTCACGAAGCGCATCGAAGAGCTACACCAATCCAGCCTTCACGAAGTTCTCGAGCCACAATCCAATGCGGTGCATGATTCAGATGATGTGTCTTCTAGATGA 1992 44.28 MKMKTQMQFPLILSFILLFLHTAKPDLASDRTALLALRSAVGGRTTRLWNSTDQNTCSWPGIQCQDNRVTVIRLPASALSGQLPAGIFSNLTRLRTLSLRLNALSGPLPSDLKACINLRNLYLQGNRFSGNLPDFVFLLHDLVRLNLAANNFSGEISPGFNNLTRLRTLFLENNHLSGVIPDLKMGDLDQFNVSNNRLNGSVPASLRSFPSSSFSGNLLCGSPLESCSGDITVPAGEGRDNGGVGVKKKKISGGAIAGIVIGSVVGFVLLLLVLMFLCRKKSSKKTSSVDVATVKHPEVEIQDGKGVVEVENGGYGNGNGNGFSVAAAAATAMTGNGKGDVNGNGGAGAKKLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAVLELGIVVAVKRLKDVTISEREFREKIEAVGSMDHENLVPLRAYYFSRDEKLLVYDYMPMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNVKSSNILLTKSYDARVSDFGLAHLVGPPSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMYEVTKRIEELHQSSLHEVLEPQSNAVHDSDDVSSR 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1405698 1408462 - evm.model.ptg000005l.1297 HCH3g0220 540948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0220 663 FunFam pollen receptor-like kinase 1 338 443 - -
HCH3g0220 663 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
HCH3g0220 663 Pfam Leucine Rich Repeat 117 135 IPR001611 GO:0005515(InterPro)
HCH3g0220 663 Pfam Leucine Rich Repeat 165 182 IPR001611 GO:0005515(InterPro)
HCH3g0220 663 PANTHER OS05G0588300 PROTEIN 7 649 IPR050994 -
HCH3g0220 663 FunFam Probable inactive receptor kinase RLK902 27 184 - -
HCH3g0220 663 Gene3D Phosphorylase Kinase; domain 1 346 443 - -
HCH3g0220 663 ProSiteProfiles Leucine-rich repeat profile. 117 139 IPR001611 GO:0005515(InterPro)
HCH3g0220 663 ProSiteProfiles Protein kinase domain profile. 369 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0220 663 CDD STKc_IRAK 375 638 - -
HCH3g0220 663 Gene3D Ribonuclease Inhibitor 140 228 IPR032675 -
HCH3g0220 663 SUPERFAMILY Protein kinase-like (PK-like) 373 649 IPR011009 -
HCH3g0220 663 Pfam Protein kinase domain 373 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0220 663 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524(InterPro)
HCH3g0220 663 SUPERFAMILY L domain-like 39 211 - -
HCH3g0220 663 FunFam Probable inactive receptor kinase At1g48480 444 646 - -
HCH3g0220 663 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
HCH3g0220 663 Gene3D Transferase(Phosphotransferase) domain 1 444 659 - -
HCH3g0220 663 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0105 HCH-Chr1:8230422 HCH3g0220 HCH-Chr3:1405698 1.70E-78 dispersed
HCH3g0220 HCH-Chr3:1405698 HCH8g0788 HCH-Chr8:44481990 8.30E-118 dispersed
HCH5g0978 HCH-Chr5:9097866 HCH3g0220 HCH-Chr3:1405698 1.30E-57 dispersed
HCH3g0220 HCH-Chr3:1405698 HCH8g1095 HCH-Chr8:46758794 3.80E-70 wgd
HCH3g0220 HCH-Chr3:1405698 HCH9g0433 HCH-Chr9:2730744 2.00E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81375 PF00069 Pkinase 4.70E-38 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0220 - - - 0.0