Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0225 ATGGCCTTAGTTCGTGAACGCCGTCAACTCAAACTCCGTCTCCCTGACCTCTCCGATTGTCGGCCCCGTTTCCCTCTCCCTCTCCCTCCTTCCACCACCAATACCGCCGCCGCCGCTCCCGCCGCAATCTCCACCGCCGACCTCGAAAAGATCCAAGTCCTCGGCCACGGAAACGGTGGCACCGTTTACAAAGTCCGTCACAAGAGAACTTCCGTCACATACGCTCTCAAAGTCGTCCACGGCGATTCCGATCCAACCGTCCGCCGTCAAGTCTTCCGCGAAATGGAAATCCTCCGCCGTACAGATTCTCCGTTCGTCGTTCAATGCCACGGAATCTTCGAGAAACCGGCCGGAGACGTAACGATCTTGATGGAATATATGGATTTGGGATCTCTCGATTCGCTCTTGAAGAAAAACTCAACGTTGCCGGAATCAACACTCGCTCACGTATCGCGTCAAGTTCTTAATGGCCTTAACTATCTTCATTCTCATAAAATCATCCATCGCGATATCAAACCTTCGAATCTATTAGTCAATAATAACATGGAAGTGAAAATCGCCGATTTCGGAGTTAGTAAAATCATGTGCCGGAGTTTAGATAATTGTAATTCGTACGTCGGAACTTGTGCTTATATGAGTCCGGAGAGGTTCGATCCGGAGACGTACGGTGGAAATTACGACGGTTACGCCGGAGATATATGGAGCCTAGGGTTAACGCTATTGGAGCTTTATTTAGGATATTTTCCGTTTCTGGCTGCCGGAGAGAGACCGGACTGGGCCAGTTTGATGTGTGCTATTTGTTTCGGAGAACCGCCGGCGTTGCCGGAGGATGCGACGGAGGAATTTAGGAGTTTTGTGGAGTGTTGTTTGCAGAAGGAATCGAGTAAACGGTGGACGGTGGCGCAGTTATTGACGCATCCGTTCGTTTGTAAAGATTCTAGATCGGAAAGATGA 954 50.0 MALVRERRQLKLRLPDLSDCRPRFPLPLPPSTTNTAAAAPAAISTADLEKIQVLGHGNGGTVYKVRHKRTSVTYALKVVHGDSDPTVRRQVFREMEILRRTDSPFVVQCHGIFEKPAGDVTILMEYMDLGSLDSLLKKNSTLPESTLAHVSRQVLNGLNYLHSHKIIHRDIKPSNLLVNNNMEVKIADFGVSKIMCRSLDNCNSYVGTCAYMSPERFDPETYGGNYDGYAGDIWSLGLTLLELYLGYFPFLAAGERPDWASLMCAICFGEPPALPEDATEEFRSFVECCLQKESSKRWTVAQLLTHPFVCKDSRSER 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1436069 1437022 - evm.model.ptg000005l.1292 HCH3g0225 540953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0225 317 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 42 313 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
HCH3g0225 317 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524(InterPro)
HCH3g0225 317 SUPERFAMILY Protein kinase-like (PK-like) 46 311 IPR011009 -
HCH3g0225 317 Pfam Protein kinase domain 49 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0225 317 FunFam Mitogen-activated protein kinase 2 129 317 - -
HCH3g0225 317 CDD PKc_MAPKK_plant_like 47 309 - -
HCH3g0225 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0225 317 FunFam Mitogen-activated protein kinase kinase 28 124 - -
HCH3g0225 317 Gene3D Phosphorylase Kinase; domain 1 39 122 - -
HCH3g0225 317 SMART serkin_6 48 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0225 317 ProSiteProfiles Protein kinase domain profile. 48 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0225 317 Gene3D Transferase(Phosphotransferase) domain 1 123 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0225 HCH-Chr3:1436069 HCH6g0026 HCH-Chr6:435463 5.40E-83 dispersed
HCH9g0143 HCH-Chr9:820812 HCH3g0225 HCH-Chr3:1436069 3.30E-23 dispersed
HCH3g0225 HCH-Chr3:1436069 HCH10g0549 HCH-Chr10:4434408 2.90E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81376 PF00069 Pkinase 1.10E-64 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0225 K20604 - csv:101203133 561.222