Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0225 ATGGCCTTAGTTCGTGAACGCCGTCAACTCAAACTCCGTCTCCCTGACCTCTCCGATTGTCGGCCCCGTTTCCCTCTCCCTCTCCCTCCTTCCACCACCAATACCGCCGCCGCCGCTCCCGCCGCAATCTCCACCGCCGACCTCGAAAAGATCCAAGTCCTCGGCCACGGAAACGGTGGCACCGTTTACAAAGTCCGTCACAAGAGAACTTCCGTCACATACGCTCTCAAAGTCGTCCACGGCGATTCCGATCCAACCGTCCGCCGTCAAGTCTTCCGCGAAATGGAAATCCTCCGCCGTACAGATTCTCCGTTCGTCGTTCAATGCCACGGAATCTTCGAGAAACCGGCCGGAGACGTAACGATCTTGATGGAATATATGGATTTGGGATCTCTCGATTCGCTCTTGAAGAAAAACTCAACGTTGCCGGAATCAACACTCGCTCACGTATCGCGTCAAGTTCTTAATGGCCTTAACTATCTTCATTCTCATAAAATCATCCATCGCGATATCAAACCTTCGAATCTATTAGTCAATAATAACATGGAAGTGAAAATCGCCGATTTCGGAGTTAGTAAAATCATGTGCCGGAGTTTAGATAATTGTAATTCGTACGTCGGAACTTGTGCTTATATGAGTCCGGAGAGGTTCGATCCGGAGACGTACGGTGGAAATTACGACGGTTACGCCGGAGATATATGGAGCCTAGGGTTAACGCTATTGGAGCTTTATTTAGGATATTTTCCGTTTCTGGCTGCCGGAGAGAGACCGGACTGGGCCAGTTTGATGTGTGCTATTTGTTTCGGAGAACCGCCGGCGTTGCCGGAGGATGCGACGGAGGAATTTAGGAGTTTTGTGGAGTGTTGTTTGCAGAAGGAATCGAGTAAACGGTGGACGGTGGCGCAGTTATTGACGCATCCGTTCGTTTGTAAAGATTCTAGATCGGAAAGATGA 954 50.0 MALVRERRQLKLRLPDLSDCRPRFPLPLPPSTTNTAAAAPAAISTADLEKIQVLGHGNGGTVYKVRHKRTSVTYALKVVHGDSDPTVRRQVFREMEILRRTDSPFVVQCHGIFEKPAGDVTILMEYMDLGSLDSLLKKNSTLPESTLAHVSRQVLNGLNYLHSHKIIHRDIKPSNLLVNNNMEVKIADFGVSKIMCRSLDNCNSYVGTCAYMSPERFDPETYGGNYDGYAGDIWSLGLTLLELYLGYFPFLAAGERPDWASLMCAICFGEPPALPEDATEEFRSFVECCLQKESSKRWTVAQLLTHPFVCKDSRSER 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1436069 1437022 - evm.model.ptg000005l.1292 HCH3g0225 540953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0225 317 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 42 313 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
HCH3g0225 317 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524(InterPro)
HCH3g0225 317 SUPERFAMILY Protein kinase-like (PK-like) 46 311 IPR011009 -
HCH3g0225 317 Pfam Protein kinase domain 49 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0225 317 FunFam Mitogen-activated protein kinase 2 129 317 - -
HCH3g0225 317 CDD PKc_MAPKK_plant_like 47 309 - -
HCH3g0225 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0225 317 FunFam Mitogen-activated protein kinase kinase 28 124 - -
HCH3g0225 317 Gene3D Phosphorylase Kinase; domain 1 39 122 - -
HCH3g0225 317 SMART serkin_6 48 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0225 317 ProSiteProfiles Protein kinase domain profile. 48 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0225 317 Gene3D Transferase(Phosphotransferase) domain 1 123 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0225 K20604 - - csv:101203133 561.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0225 HCH-Chr3:1436069 HCH6g0026 HCH-Chr6:435463 5.40E-83 dispersed
HCH9g0143 HCH-Chr9:820812 HCH3g0225 HCH-Chr3:1436069 3.30E-23 dispersed
HCH3g0225 HCH-Chr3:1436069 HCH10g0549 HCH-Chr10:4434408 2.90E-60 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0625 . 17 352 MAP Kinase Kinase Gene Family AT4G26070 67.4 4.7e-133 471.1
HCH10g0549 . 31 357 MAP Kinase Kinase Gene Family AT4G26070 66.8 4.7e-125 444.5
HCH10g0504 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.6 6.8e-108 387.5
HCH8g0625 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 68.9 1.4e-134 476.1
HCH10g0549 . 6 331 MAP Kinase Kinase Gene Family AT4G29810 64.6 3.1e-121 431.8
HCH10g0504 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.5 3.0e-108 388.7
HCH9g0122 . 36 519 MAP Kinase Kinase Gene Family AT5G40440 79.3 1.3e-227 785.8
HCH6g0026 . 82 371 MAP Kinase Kinase Gene Family AT1G51660 74.1 1.2e-123 439.9
HCH6g0026 . 80 367 MAP Kinase Kinase Gene Family AT3G21220 72.9 2.6e-123 438.7
HCH3g0225 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 55.4 6.3e-85 311.2
HCH10g0504 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.1 8.0e-168 586.6
HCH8g0625 . 10 351 MAP Kinase Kinase Gene Family AT5G56580 59.8 4.2e-116 414.8
HCH10g0549 . 20 345 MAP Kinase Kinase Gene Family AT5G56580 59.5 7.6e-110 394.0
HCH3g0225 . 1 309 MAP Kinase Kinase Gene Family AT1G18350 61.9 5.8e-106 380.9
HCH6g0026 . 80 342 MAP Kinase Kinase Gene Family AT1G18350 52.6 1.9e-77 286.2
HCH3g0225 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 51.3 2.3e-80 295.8
HCH3g0225 . 1 312 MAP Kinase Kinase Gene Family AT1G73500 65.8 1.3e-113 406.4
HCH6g0026 . 83 339 MAP Kinase Kinase Gene Family AT1G73500 53.8 3.6e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81376 PF00069 Pkinase 1.10E-64 CL0016 HCH PK