Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0229 ATGCTTACAGACGTTTCTTCTTCTTCTTTTGAGCCTTTTTCTTGCAGTTTATTAGATACAAATGGAACCAATAACAAGAGAAAAAGAAGACCTGCTGGAACTCCTGACCCAGATGCAGAAGTCGTATCTCTTTCACCAAAAACCCTATTGGAATCGGATCGTTACGTTTGTGAGATCTGCAACCAGGGTTTTCAAAGAGATCAGAATTTACAGATGCACCGGCGACGGCATAAGGTTCCATGGAAGCTTTTGAAGAGAGAGACGGCGGCGGTGGTGAGGAAAAGAGTGTTTGTTTGCCCGGAACCTAGCTGTTTACACCATAACCCTACTCACGCTCTCGGTGATTTGGTCGGAATCAAGAAACATTTCCGGCGAAAACATAGTAATCATAAGCAATGGGTTTGTGAGAAATGTTCCAAAGCTTATGCTGTTCAATCCGATTATAAAGCTCATTTGAAAACTTGTGGTACTAGAGGCCATTCCTGTGATTGTGGTCGTGTTTTCTCCAGGGTTGAAAGTTTTATAGAACATCAAGATACTTGCAAACTTGGTTGTCAAGAATCCGACCTACAAACGTTAAAATCGGCGGCAAAGGTTGCGGCATCGGCATCGGTAGCTGTTTGCTTGTCTAGGACAGCTTCTAGTCCAACTCCAAGCCCTTCCTCTGATACCAACTTCAGCAGTGATCGCCCTAGCTTTTGGCCTTCTTTAACTCCATTAAACAATGCTCCTAGTAATCACTATCATGCAGAAGTCTCTAAGGTTGCTCCTCAAAACCAAAACCAAAACCATCAAAACTTAGAATTGCAACTCTCCACTACTTCAACGACTTCCATCCATGTCTCAGTTTCTCCAAAAAGAAGTGAAAATTACTCCTCTACCCATTTGCAGCTTTCCATTGGTTCTTGTAACTACGGTGAGAAACTCAGTAAGGATCATCAGACCGACAACGGCCTAGCGTTATCGAGGCTGAAAGAAGAAGCTAGAGAGCAGCTGAGGGTGGCTATGGCAGAGAAGGCAGCTGCTGATGAAGCTAGAAAGGAAGCAAAGAAGCAGATTGAATTGGCAGAGAGAGAATTGGAAAGTGCCAAGAGAATGAGACATCAAGCGCAGGCTGAGTTACAAAGAGCAGTTGCTTTGAAAGAACATGCCATCAAGAAGATCAATTCCACTATTCTCCAAATTACTTGTCAAGTTTGCAGGCAGCATTTTCAGTTACCAAAGATTTGA 1230 43.25 MLTDVSSSSFEPFSCSLLDTNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETAAVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCKLGCQESDLQTLKSAAKVAASASVAVCLSRTASSPTPSPSSDTNFSSDRPSFWPSLTPLNNAPSNHYHAEVSKVAPQNQNQNHQNLELQLSTTSTTSIHVSVSPKRSENYSSTHLQLSIGSCNYGEKLSKDHQTDNGLALSRLKEEAREQLRVAMAEKAAADEARKEAKKQIELAERELESAKRMRHQAQAELQRAVALKEHAIKKINSTILQITCQVCRQHFQLPKI 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1474563 1476575 - evm.model.ptg000005l.1288 HCH3g0229 540957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0229 409 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
HCH3g0229 409 SUPERFAMILY beta-beta-alpha zinc fingers 54 153 IPR036236 -
HCH3g0229 409 Gene3D Classic Zinc Finger 33 97 - -
HCH3g0229 409 SMART c2h2final6 133 160 IPR013087 -
HCH3g0229 409 SMART c2h2final6 55 77 IPR013087 -
HCH3g0229 409 SMART c2h2final6 97 127 IPR013087 -
HCH3g0229 409 Coils Coil 325 380 - -
HCH3g0229 409 Gene3D Classic Zinc Finger 118 197 - -
HCH3g0229 409 Pfam Zinc finger, C2H2 type 55 77 IPR013087 -
HCH3g0229 409 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 160 188 - -
HCH3g0229 409 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
HCH3g0229 409 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 372 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH3g0229 409 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 132 156 - -
HCH3g0229 409 MobiDBLite consensus disorder prediction 21 42 - -
HCH3g0229 409 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 93 127 - -
HCH3g0229 409 MobiDBLite consensus disorder prediction 212 245 - -
HCH3g0229 409 FunFam protein indeterminate-domain 12-like 34 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0011 HCH-Chr3:109603 HCH3g0229 HCH-Chr3:1474563 1.60E-109 dispersed
HCH3g0229 HCH-Chr3:1474563 HCH6g0106 HCH-Chr6:1325702 2.80E-60 dispersed
HCH3g0229 HCH-Chr3:1474563 HCH11g0273 HCH-Chr11:2485642 2.20E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33296 PF00096 zf-C2H2 0.0038 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0229 K25871 - csv:101210748 547.74