Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0252 ATGCCGCCGAGAAGATATGCTTTTGGAAGAGCCGATGAGGCTACACATCCCGACTCCATTAGAGCTACTTTAGCTGAGTTTGTTTCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCTCTGTCCTCGCTCTTGACAAAATATTAAAGGCGGATCGCGGTCGGGATTACGGTCGGGATTATGGTACGTCCAGTTACAGGAGGACAGATACCGGTAGTAGACCGGCGACGGAGTTGATAGTTATAGCCGTGGCGCATGCTTTTGCACTGTTTTCGGCGGTTGCGGCGAGCATCAACGTCTCCGGTGGCCATGTTAATCCTGCTGTAACATTTGGTGCTCTTCTTGGAGGAAGAATCTCTCTTATCCGTGCTATTTTCTATTGGGTTGCTCAGCTTTTGGGTGGTATCGTTGCTTCACTTCTGTTAAGATTAGCAACAGCTGGCATGAGGCCTATGGGGTTTTTTGTTTCATCAGGAGTTGGGGAATTGCATGGTTTTTTGCTTGAGATTATTCTGACATTTGCATTGGTGTATACTGTCTATGCAACTGCAATTGACCCCAAGAGGGGTAGTTTGGGAATTATAGCACCTTTGGCAATCGGGTTTATGGTCGGGGCAAATATCCTGGTGGGCGGGCCGTTTGATGGAGCGTGCATGAACCCGGCCCGGGCATTTGGGCCTTCATTAGTGGGCTGGAGATGGGACAATCACTGGATCTATTGGATTGGCCCATTGCTGGGTGGTGGGCTTGCTGCTCTTGTATATGAGTACTTGGTGATTCCAATGGAGCCTCCACTCCATACCCACCAGCCTTTGGCTCCTGAAGATTACTGA 831 49.22 MPPRRYAFGRADEATHPDSIRATLAEFVSTFIFVFAGEGSVLALDKILKADRGRDYGRDYGTSSYRRTDTGSRPATELIVIAVAHAFALFSAVAASINVSGGHVNPAVTFGALLGGRISLIRAIFYWVAQLLGGIVASLLLRLATAGMRPMGFFVSSGVGELHGFLLEIILTFALVYTVYATAIDPKRGSLGIIAPLAIGFMVGANILVGGPFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPMEPPLHTHQPLAPEDY 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1613103 1614363 + evm.model.ptg000005l.1265 HCH3g0252 540980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0252 276 ProSitePatterns MIP family signature. 103 111 IPR022357 -
HCH3g0252 276 FunFam Probable aquaporin TIP1-1 4 272 - -
HCH3g0252 276 CDD MIP 21 257 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g0252 276 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g0252 276 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g0252 276 PRINTS Major intrinsic protein family signature 200 222 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g0252 276 PRINTS Major intrinsic protein family signature 167 185 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g0252 276 PRINTS Major intrinsic protein family signature 237 257 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g0252 276 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g0252 276 PANTHER AQUAPORIN-8 5 266 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
HCH3g0252 276 SUPERFAMILY Aquaporin-like 13 267 IPR023271 -
HCH3g0252 276 Gene3D Glycerol uptake facilitator protein. 5 263 IPR023271 -
HCH3g0252 276 Pfam Major intrinsic protein 14 254 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g0252 276 NCBIfam MIP family channel protein 25 254 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0252 HCH-Chr3:1613103 HCH9g0550 HCH-Chr9:3606065 5.20E-82 dispersed
HCH3g0252 HCH-Chr3:1613103 HCH9g0227 HCH-Chr9:1349192 1.60E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0252 K09873 - csv:101208863 457.218