Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0273 ATGGAGGGAGCTACTGGTTTTGGCCGTGGAAGTTTTGTCAAGAAGGAGGATATGAGGGTTGAATCTGGTGGTGGAGATGAAGATTCAGGCTGTAAAGATGATGTTCTTATTAAGATTGGAAACTATGGGAAACAGGAGCTTGAAAATGAAGACAAGACAAGCTCATCTGATCAATTTAAGGATTTAAGCAGCAGCAAGCTCCAGGATGAAGAATTACTTGAATCAGCTCGAGTAGAAATGGGTGAAGTTAGAGAAGAAAACCAAAGACTAAAGGAAAGTTTAAGTCGAATCATGAAAGATTACGAAACCCTACGAATGCAATTCCTTGGAATGATCAAACAAGATGGAAACAGATCACCCACAGAAGATCAAAAGTTAGCCATTAACCGCGGGCAAGACGAAACCGAAGAAACCGAACTAGTTTCTCTTTCACTAGGACGATTTCCAAGCGATCACAAGATCAAGAAAGACGATAAAGGGAAAGAGAATAGTAACAACGAACAATCAACCGTTGTTAAAGAAAGCTTGTCTTTAGGTTTAGATTGCAAATTCGGACAAGGCGCGACGACAACGACAACGACAACAACAACAACGGTGAAAGCGGCTTCTTCACCGAACCGAAGCCAGACGAGTAGCTTCGATCAAGATCCGGGTGCAAAGGAAGAAGCGGGAGAGACGTGGCCACCGAGCAAAGCGATGAAGATGCATATGAGAAGTGGGGATGATAGTGAAGTTATGCAGCAGAATCCGCCAAAGAAAGCTAGGGTTTGTGTTAGGGCTCGATGTGAGACCACGACGATGAATGATGGGTGTCAATGGAGGAAATATGGACAGAAAATTGCAAAAGGAAATCCATGTCCTCGAGCTTATTATCGTTGTACTGGTTCACCCACATGTCCTGTCAGAAAACAGGTACAAAGATGTGCAGACGACATGTCAATCTTAATCACCACCTACGAAGGAAATCACAACCACCCCTTACCAGTTTCAGCCACCGCCATGGCTTCCACCACTTCCGCCGCCGCCTCAATGCTTCTCTCCGGTTCCTCCTCCTCAACCTCCGCCGCACCCGCCTCTCAAAATCCATCAACTCCAGCCAATCTTCATGGCCTCAACTTTTACCTCAATGGAAATTCAAATTCCAAAGCACAACTCTACTTACCAAATTCATCAATCTCATCAACTTCTCCCACACATCCAACAATCACTCTAGACCTCACTACAAACCCATCTTCCTCCTCCTCCTCTTCTTCATCATCATCCCATTTTAGCAAATTCCCATCAACTGCTTTTCCAAATCCAAGGTACCCGTTCACAAACCAGCTTGATTTTGGATCATCAAGAAACAATAATCATGTACTGTCATGGAATAATAATGGCATTCTTAGCTACACAAATCAACAACAAGCTTATAACAGAAACAATAGCAATATTATTCCAAATGGAAATAATATGTATCAACTTCAAAACTACATGCAAAAGAACAATAATGTCAGCTCCTCCTTAGCTTCAACCGATACGATTGCGGCAGCAACTAAGGCGATCACGGCGGACCCGAGCTTTCAATCTGCTTTAGCGGCAGCTTTGACGTCGATCATAGGGAATGGAGGCGGTGGTGAGAGATTGAAGATGCTTCCGCCATTTCAATTTTCGACGACGAAAGGGAATGAGAATGGAAATGGGAATATGATGTTTGTTTCATCTAATGCTACATTGCCTTTTTCGACGGCTAAAAGTGCTTCTGCATCTCCTGCTGAGCATATAGACCTTACCAATTAA 1779 43.45 MEGATGFGRGSFVKKEDMRVESGGGDEDSGCKDDVLIKIGNYGKQELENEDKTSSSDQFKDLSSSKLQDEELLESARVEMGEVREENQRLKESLSRIMKDYETLRMQFLGMIKQDGNRSPTEDQKLAINRGQDETEETELVSLSLGRFPSDHKIKKDDKGKENSNNEQSTVVKESLSLGLDCKFGQGATTTTTTTTTTVKAASSPNRSQTSSFDQDPGAKEEAGETWPPSKAMKMHMRSGDDSEVMQQNPPKKARVCVRARCETTTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCADDMSILITTYEGNHNHPLPVSATAMASTTSAAASMLLSGSSSSTSAAPASQNPSTPANLHGLNFYLNGNSNSKAQLYLPNSSISSTSPTHPTITLDLTTNPSSSSSSSSSSSHFSKFPSTAFPNPRYPFTNQLDFGSSRNNNHVLSWNNNGILSYTNQQQAYNRNNSNIIPNGNNMYQLQNYMQKNNNVSSSLASTDTIAAATKAITADPSFQSALAAALTSIIGNGGGGERLKMLPPFQFSTTKGNENGNGNMMFVSSNATLPFSTAKSASASPAEHIDLTN 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1734331 1737334 - evm.model.ptg000005l.1244 HCH3g0273 541001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0273 592 SMART WRKY_cls 267 327 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g0273 592 MobiDBLite consensus disorder prediction 112 173 - -
HCH3g0273 592 MobiDBLite consensus disorder prediction 195 235 - -
HCH3g0273 592 Coils Coil 73 107 - -
HCH3g0273 592 MobiDBLite consensus disorder prediction 149 164 - -
HCH3g0273 592 MobiDBLite consensus disorder prediction 195 216 - -
HCH3g0273 592 Gene3D WRKY domain 252 329 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g0273 592 FunFam probable WRKY transcription factor 31 252 329 - -
HCH3g0273 592 SUPERFAMILY WRKY DNA-binding domain 260 328 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g0273 592 MobiDBLite consensus disorder prediction 1 71 - -
HCH3g0273 592 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 55 535 IPR044810 GO:0003700(InterPro)
HCH3g0273 592 MobiDBLite consensus disorder prediction 44 71 - -
HCH3g0273 592 ProSiteProfiles WRKY domain profile. 262 328 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g0273 592 MobiDBLite consensus disorder prediction 12 34 - -
HCH3g0273 592 MobiDBLite consensus disorder prediction 391 426 - -
HCH3g0273 592 Pfam WRKY DNA -binding domain 268 326 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0798 HCH-Chr14:36000667 HCH3g0273 HCH-Chr3:1734331 1.60E-38 dispersed
HCH3g0273 HCH-Chr3:1734331 HCH7g0245 HCH-Chr7:1692539 1.40E-44 dispersed
HCH11g0870 HCH-Chr11:39607068 HCH3g0273 HCH-Chr3:1734331 9.80E-39 transposed
HCH3g0273 HCH-Chr3:1734331 HCH8g1315 HCH-Chr8:48154728 8.50E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33299 PF03106 WRKY 5.60E-24 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0273 - - - 0.0