Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0274 ATGTCGCCGATAGCCTCTAAAACTCTATCTCGCTTTCTCTCTCGTCGCCATTCTTCTCTCTCTTTCTCTATCCTTTCCAATTCCAGATCAATTCATTCTTTACCATTTTCTTCTTTGGAAGTGGAAGAAATTTCAGGTTCTCAACCTGCTCAAGTACATAACCTTGTGGAGGGTAAATGGATTGGATCTTCAATTTGGAATACTATTTTGGATCCTTTAAATGGAGAGCCATTCATTAAAGTTGCTGAGGTGGATCAAACTGAAATTCAGCCATTTGTGAAGAGCTTGGCCAGTTGCCCCAAACATGGCCTACACAATCCCTTCAAATCGCCCGAGAGGTATCTTTTGTTTGGAGATATATCTGCCAAGGCTGCCCACATGCTTTCCCTACCCAAGGTGTCTGATTTCTTCACGAGGTTAATTCAAAGAGTTTCTCCAAAAAGTTATCAGCAAGCTTATGCTGAAGTATATGTTACTCAGAAATTTCTAGAGAATTTCTCTGGTGACCAGGTTCGCTTCCTGGCAAGATCTTTTGCTGTACCTGGAAATCATCTTGGACAACAAAGTCATGGTTTTCGCTGGCCCTATGGTCCTGTTGCAATCATTACACCTTTCAATTTTCCTCTTGAAATTCCTGTACTTCAGCTGATGGGTGCGCTTTACATGGGAAACAAACCTGTTTTAAAAGTTGATAGCAAGGTCAGCATAGTTATGGAGCAAATGATTCGATTGCTTCATTATTGTGGGCTACCTGTGGAAGATTTAGATTTCATAAATTCTGATGGTAATGCAATGAACAGGTTATTGTTGGAGGCAGATCCACGGATGACACTTTTTACTGGTAGCTCAAGAGTAGCAGATAAGTTGGCTGTTGACCTAAAGGGTCGCATTAAATTGGAAGATGCAGGATTTGACTGGAAAATTCTGGGGCCAGATGTACAAGAGGAGGATTATGTTGCATGGGTGTGTGATCAGGATGCTTATGCTTGTAGTGGTCAGAAGTGCTCAGCGCAGTCAATACTATTCATGCATGAGAACTGGTCTAAGGCTTCACTTATTCCCAAGATAAAGAATCTTGCTGAGAGGAGGAAGTTGGGAGATTTGACAATTGGCCCAGTCCTCACTGTCACTAATGAAGTGATGCTGGATCACATGAATAAATTGCTCCAGATATCAGGGGCAAAGCTACTTTTTGGGGGTGAACCTCTTGAGAAGCATTCCATCCCGTCCATATATGGTGCTTTAAAACCCACTGCAATATATATTCCGCTTGAAGAAATGATGAAGGCGGGCAATTATGAGCTTGCGACTAAAGAAATTTTTGGACCATTCCAGATTATTACTGAATATAACACAGATCAACTTCCAGTAGTGTTGGATGCTCTCGAGAGGATGCATGCTCATCTAACAGCAGCTGTTGTTTCAAATGACCCCCATTTTCTGCAGGAAGTTATTGGCAATACTGTGAATGGTACAACATATGCTGGATTACGAGCAAGAACAACCGGCGCTCCACAGAACCACTGGTTTGGACCAGCAGGGGACCCCAGAGGTGCAGGTATCGGGACTCCAGAAGCAATAAAACTTGTATGGTCTTGCCATAGAGAGATCATATATGATCTTGGCCCCTTGCCTAAGCACTGGGAAACCCCACCATCAACCTGA 1665 42.82 MSPIASKTLSRFLSRRHSSLSFSILSNSRSIHSLPFSSLEVEEISGSQPAQVHNLVEGKWIGSSIWNTILDPLNGEPFIKVAEVDQTEIQPFVKSLASCPKHGLHNPFKSPERYLLFGDISAKAAHMLSLPKVSDFFTRLIQRVSPKSYQQAYAEVYVTQKFLENFSGDQVRFLARSFAVPGNHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVDSKVSIVMEQMIRLLHYCGLPVEDLDFINSDGNAMNRLLLEADPRMTLFTGSSRVADKLAVDLKGRIKLEDAGFDWKILGPDVQEEDYVAWVCDQDAYACSGQKCSAQSILFMHENWSKASLIPKIKNLAERRKLGDLTIGPVLTVTNEVMLDHMNKLLQISGAKLLFGGEPLEKHSIPSIYGALKPTAIYIPLEEMMKAGNYELATKEIFGPFQIITEYNTDQLPVVLDALERMHAHLTAAVVSNDPHFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDLGPLPKHWETPPST 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1746182 1752086 + evm.model.ptg000005l.1243 HCH3g0274 541002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0274 554 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 328 339 IPR016160 GO:0016491(InterPro)
HCH3g0274 554 SUPERFAMILY ALDH-like 52 522 IPR016161 GO:0016491(InterPro)
HCH3g0274 554 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 45 303 IPR016162 GO:0016491(InterPro)
HCH3g0274 554 FunFam Aldehyde dehydrogenase 12 311 499 - -
HCH3g0274 554 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 43 549 IPR044638 GO:0003842(PANTHER)|GO:0004029(InterPro)|GO:0005739(PANTHER)|GO:0010133(PANTHER)
HCH3g0274 554 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 308 497 IPR016163 GO:0016620(InterPro)
HCH3g0274 554 FunFam probable aldehyde dehydrogenase 45 303 - -
HCH3g0274 554 Pfam Aldehyde dehydrogenase family 70 495 IPR015590 GO:0016491(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0274 K00294 - rcu:8277377 952.584