Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH3g0276 | ATGCATTCATATGTCAAAGAAGCTTCACCACCCCTCCTGCCAGCATCATGCTTATGTGATTTTGATGAAGTGTGGCAGAAGCGAGCTGAAGAAGCCAAGAAGGCTGCCTTTAAGGCCTATGATCCTAATCCAGAAAAAGTCACCAATAATTTCAACAAGCAAGTTCACAGAACCATAGAAGGGAGAAATGACACAAGGAGAAGTTTGAAGAAATACAACGGTCCGTGCTTAGCAACGAATCCGATTGACCGATGTTGGAGATGTGATAAACATTGGGCTAAAAACCGCAAGAAGCTAGCTGATTGTGCCCTCGGCTTCGGTCGTGGAACAACTGGAGGCAAAGATGGAAGATTTTACGTGGTCAGGGATTCGTCCGATAATGACTTGCTTAATCCTAAACCGGGGACCTTGCGCTATGCTGTGTTACAGGATAGACCACTTTGGATTATATTTGCACATGACATGGTGATTAAGCTGAGTGAAGAGCTTATATTCACTGATAACAAGACAATAGATGGACGTGGTGCCAATGTGCATATCTCTAATGGTGGTCAGATTACTCTACAATTTGTGAAGAATATAATCATCCATAATATTCATATCCATGATATCAAGGCTGGCAATGGAGGCCTTATAAGGGACTCATTAAACCACTACGGATTTCGAACACAAAGCGACGGCGATGGCATCTCATTATACGGAGCCTCGAATATTTGGATAGATCATGTTTCAATTTCTAATTGTCAAGATGGACTAATAGACGCTGTCATGGCATCGACTGCCATTACCATCTCCAACTGCCACTTTGCCCATCATAACGACGTGATGTTATTTGGTGCAAGTGATGGCTACTCGAATGATGAAGTTATGCAGATAACTGTTGCATTCAATCATTTTGGTAAAGGTTTAGTGCAAAGGATGCCGAGATGTCGATGGGGATTAGTTCATGTTGTCAATAATGACTACACTCACTGGCTCATGTATGCCATTGGAGGCAGCCACAACCCCACCATTATTAGCCAGGGCAACCGTTTCATTGCCCCACCTGACCCAAATTGCAAAGAGGTGACAAAAAGGGCGTATGCCCCAGAAAGTGAGTGGAGATCATGGAGTTGGAGATCAGAGGGAGATTTGATGATGAATGGAGCTTTTTTCGTCCAATCTGGGAATCCAATCAGAAAATACTCAAAGGAAAACGTGGTCCATGCAAAACCAGGGACATTTGTAACAAGGCTCACACGATTTTCTGGTCCTCTTAAATGCAAAAAAAATCAGCCATGTTAG | 1284 | 43.15 | MHSYVKEASPPLLPASCLCDFDEVWQKRAEEAKKAAFKAYDPNPEKVTNNFNKQVHRTIEGRNDTRRSLKKYNGPCLATNPIDRCWRCDKHWAKNRKKLADCALGFGRGTTGGKDGRFYVVRDSSDNDLLNPKPGTLRYAVLQDRPLWIIFAHDMVIKLSEELIFTDNKTIDGRGANVHISNGGQITLQFVKNIIIHNIHIHDIKAGNGGLIRDSLNHYGFRTQSDGDGISLYGASNIWIDHVSISNCQDGLIDAVMASTAITISNCHFAHHNDVMLFGASDGYSNDEVMQITVAFNHFGKGLVQRMPRCRWGLVHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPDPNCKEVTKRAYAPESEWRSWSWRSEGDLMMNGAFFVQSGNPIRKYSKENVVHAKPGTFVTRLTRFSGPLKCKKNQPC | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1761408 | 1764896 | - | evm.model.ptg000005l.1241 | HCH3g0276 | 541004 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH3g0276 | 427 | Pfam | Pectate lyase, N terminus | 20 | 69 | IPR007524 | GO:0030570(InterPro) | |
HCH3g0276 | 427 | Pfam | Pectate lyase | 164 | 345 | IPR002022 | - | |
HCH3g0276 | 427 | PANTHER | PECTATE LYASE 18-RELATED | 41 | 424 | IPR045032 | GO:0030570(InterPro) | |
HCH3g0276 | 427 | SMART | pbh1 | 160 | 182 | IPR006626 | - | |
HCH3g0276 | 427 | SMART | pbh1 | 235 | 266 | IPR006626 | - | |
HCH3g0276 | 427 | SMART | pbh1 | 191 | 234 | IPR006626 | - | |
HCH3g0276 | 427 | PRINTS | Pollen allergen Amb family signature | 370 | 394 | IPR018082 | - | |
HCH3g0276 | 427 | PRINTS | Pollen allergen Amb family signature | 102 | 119 | IPR018082 | - | |
HCH3g0276 | 427 | PRINTS | Pollen allergen Amb family signature | 226 | 247 | IPR018082 | - | |
HCH3g0276 | 427 | PRINTS | Pollen allergen Amb family signature | 162 | 178 | IPR018082 | - | |
HCH3g0276 | 427 | PRINTS | Pollen allergen Amb family signature | 306 | 325 | IPR018082 | - | |
HCH3g0276 | 427 | PRINTS | Pollen allergen Amb family signature | 126 | 151 | IPR018082 | - | |
HCH3g0276 | 427 | PRINTS | Pollen allergen Amb family signature | 328 | 347 | IPR018082 | - | |
HCH3g0276 | 427 | Gene3D | - | 79 | 420 | IPR012334 | - | |
HCH3g0276 | 427 | SUPERFAMILY | Pectin lyase-like | 69 | 421 | IPR011050 | - | |
HCH3g0276 | 427 | SMART | amb_all | 154 | 351 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g0276 | HCH-Chr3:1761408 | HCH6g1437 | HCH-Chr6:48126885 | 1.50E-136 | dispersed | |
HCH1g0952 | HCH-Chr1:57750682 | HCH3g0276 | HCH-Chr3:1761408 | 9.40E-179 | wgd | |
HCH3g0276 | HCH-Chr3:1761408 | HCH9g0207 | HCH-Chr9:1220532 | 2.30E-177 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH3g0276 | K01728 | - | csv:101218812 | 744.962 |