Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0276 ATGCATTCATATGTCAAAGAAGCTTCACCACCCCTCCTGCCAGCATCATGCTTATGTGATTTTGATGAAGTGTGGCAGAAGCGAGCTGAAGAAGCCAAGAAGGCTGCCTTTAAGGCCTATGATCCTAATCCAGAAAAAGTCACCAATAATTTCAACAAGCAAGTTCACAGAACCATAGAAGGGAGAAATGACACAAGGAGAAGTTTGAAGAAATACAACGGTCCGTGCTTAGCAACGAATCCGATTGACCGATGTTGGAGATGTGATAAACATTGGGCTAAAAACCGCAAGAAGCTAGCTGATTGTGCCCTCGGCTTCGGTCGTGGAACAACTGGAGGCAAAGATGGAAGATTTTACGTGGTCAGGGATTCGTCCGATAATGACTTGCTTAATCCTAAACCGGGGACCTTGCGCTATGCTGTGTTACAGGATAGACCACTTTGGATTATATTTGCACATGACATGGTGATTAAGCTGAGTGAAGAGCTTATATTCACTGATAACAAGACAATAGATGGACGTGGTGCCAATGTGCATATCTCTAATGGTGGTCAGATTACTCTACAATTTGTGAAGAATATAATCATCCATAATATTCATATCCATGATATCAAGGCTGGCAATGGAGGCCTTATAAGGGACTCATTAAACCACTACGGATTTCGAACACAAAGCGACGGCGATGGCATCTCATTATACGGAGCCTCGAATATTTGGATAGATCATGTTTCAATTTCTAATTGTCAAGATGGACTAATAGACGCTGTCATGGCATCGACTGCCATTACCATCTCCAACTGCCACTTTGCCCATCATAACGACGTGATGTTATTTGGTGCAAGTGATGGCTACTCGAATGATGAAGTTATGCAGATAACTGTTGCATTCAATCATTTTGGTAAAGGTTTAGTGCAAAGGATGCCGAGATGTCGATGGGGATTAGTTCATGTTGTCAATAATGACTACACTCACTGGCTCATGTATGCCATTGGAGGCAGCCACAACCCCACCATTATTAGCCAGGGCAACCGTTTCATTGCCCCACCTGACCCAAATTGCAAAGAGGTGACAAAAAGGGCGTATGCCCCAGAAAGTGAGTGGAGATCATGGAGTTGGAGATCAGAGGGAGATTTGATGATGAATGGAGCTTTTTTCGTCCAATCTGGGAATCCAATCAGAAAATACTCAAAGGAAAACGTGGTCCATGCAAAACCAGGGACATTTGTAACAAGGCTCACACGATTTTCTGGTCCTCTTAAATGCAAAAAAAATCAGCCATGTTAG 1284 43.15 MHSYVKEASPPLLPASCLCDFDEVWQKRAEEAKKAAFKAYDPNPEKVTNNFNKQVHRTIEGRNDTRRSLKKYNGPCLATNPIDRCWRCDKHWAKNRKKLADCALGFGRGTTGGKDGRFYVVRDSSDNDLLNPKPGTLRYAVLQDRPLWIIFAHDMVIKLSEELIFTDNKTIDGRGANVHISNGGQITLQFVKNIIIHNIHIHDIKAGNGGLIRDSLNHYGFRTQSDGDGISLYGASNIWIDHVSISNCQDGLIDAVMASTAITISNCHFAHHNDVMLFGASDGYSNDEVMQITVAFNHFGKGLVQRMPRCRWGLVHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPDPNCKEVTKRAYAPESEWRSWSWRSEGDLMMNGAFFVQSGNPIRKYSKENVVHAKPGTFVTRLTRFSGPLKCKKNQPC 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1761408 1764896 - evm.model.ptg000005l.1241 HCH3g0276 541004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0276 427 Pfam Pectate lyase, N terminus 20 69 IPR007524 GO:0030570(InterPro)
HCH3g0276 427 Pfam Pectate lyase 164 345 IPR002022 -
HCH3g0276 427 PANTHER PECTATE LYASE 18-RELATED 41 424 IPR045032 GO:0030570(InterPro)
HCH3g0276 427 SMART pbh1 160 182 IPR006626 -
HCH3g0276 427 SMART pbh1 235 266 IPR006626 -
HCH3g0276 427 SMART pbh1 191 234 IPR006626 -
HCH3g0276 427 PRINTS Pollen allergen Amb family signature 370 394 IPR018082 -
HCH3g0276 427 PRINTS Pollen allergen Amb family signature 102 119 IPR018082 -
HCH3g0276 427 PRINTS Pollen allergen Amb family signature 226 247 IPR018082 -
HCH3g0276 427 PRINTS Pollen allergen Amb family signature 162 178 IPR018082 -
HCH3g0276 427 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
HCH3g0276 427 PRINTS Pollen allergen Amb family signature 126 151 IPR018082 -
HCH3g0276 427 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
HCH3g0276 427 Gene3D - 79 420 IPR012334 -
HCH3g0276 427 SUPERFAMILY Pectin lyase-like 69 421 IPR011050 -
HCH3g0276 427 SMART amb_all 154 351 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0276 HCH-Chr3:1761408 HCH6g1437 HCH-Chr6:48126885 1.50E-136 dispersed
HCH1g0952 HCH-Chr1:57750682 HCH3g0276 HCH-Chr3:1761408 9.40E-179 wgd
HCH3g0276 HCH-Chr3:1761408 HCH9g0207 HCH-Chr9:1220532 2.30E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0276 K01728 - csv:101218812 744.962