Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0284 ATGGGCATTTTGGTTTTGATTTTCTCTGCTCTTTTCTTAGCTACCCTTTTGAGCTCTTGTTCTTTTGCTCTCACCCCAGATGGCTTAACATTGTTGGAAATTAGAAGCACTTTTAATGATAGTAAGAATCTCCTTAGTAATTGGGAAGCTTCTGATGAGTCTCCTTGTAAATGGACTGGTATCTCTTGTCATCCTGAGGACCAACGAGTTAGCTCAATTAACTTACCTTACATGCAACTAGGAGGGATTATTTCTCCCACCATTGGTAAACTCAGTAGATTACAGAGACTGGCACTTCACCAAAATAGCTTACATGGATATATTCCTAATGAAATCGCTAAATGTACTCAGCTTAGAGCCCTGTATCTGAGGTCCAATTATCTTCAAGGTGGCATACCATCAGATATCGGAAACCTCTCCGCTCTTACTATACTGGATTTATCAAGCAATTCCCTGAAGGGTGCTATTCCATCATCTATTGGTCGTCTAACACTTTTGCGCCATCTGAATTTGTCCACGAACTTTTTTTCTGGGGAAATACCAGATATTGGAGTACTAAGCATTTTTAAAAGCAATTCGTTCCTTGGTAATCTAGATCTCTGTGGTCAACAAGTTAACAAGCCCTGCCGAACCTCGTTAGGATTCCCTGCTGTGTTGCCTCATGCTGCAAGTGAGGAAGCTACAGTTCCTGTGAAAAGATCTTCCCATTACATCAAAGGGGTTCTGATCGGTGCAATGTCTACAATGGGTGTTGCACTTGTAGTGCTTGTTCCATTCTTGTGGATCCGTTGGCTATCAAAGAAGGAAAGAGCTGCCAAGAAATACACGGAAGTTAAAAAGCAAGTGGTTCATGAATCAAGCACAAAACTTATAACATTTCACGGTGACCTTCCATATCCATCGTGTGAGATCATAGAAAAGCTGGAGTCATTAGATGATGAAGATATTGTTGGTTCAGGGGGATTTGGTACTGTATACCGGATGGTCATGAATGATTGTGGAACGTTTGCTGTTAAAAGGATTGATAGAAGCAGAAAAGGTTCAGACCAAGTGTTCGAGAGGGAGTTGGAGATCTTGGGTTGCATCAAACACATAAATTTAGTAAACTTGCGAGGATATTGTAGTCTCCCTACTTCAAAACTTCTTATCTATGACTTTCTAGCAATGGGCAGCTTAGATGATTTCTTGCACGAACCGGGACGAGAAAAACAATCTTTGGATTGGAGCGCTCGTCTAAACATAGCATTGGGCTCTGCAAGAGGGATTGCCTACTTGCATCATGATTGCTGTCCAAAGATTGTGCATCGTGATATTAAATCCAGTAATATTTTACTTGATGAAAACTTGGAGCCCCATGTATCTGATTTTGGACTTGCCAAGCTTTTAGTTGATGAGGATGCCCATGTAACTACTGTTGTTGCTGGAACATTTGGTTATTTGGCACCAGAATACCTTCAAAGTGGGAGAGCAACTGAAAAATCAGATGTCTATAGCTTTGGGGTTTTATTACTGGAGCTCGTGACTGGGAAACGACCTACCGATCCTTCATTCCTCCAGAGAGGCTTAAATGTTGTTGGTTGGATGAACACATTACTGGGAGATAACAAAATGGAAGACATAGTCGACAGCAGGTGCAAAGATGTTGATGCAGATACTTTAGAAGCAATCCTTGAAATCGCTGCCAAGTGCACAGATGCTGACCCAGACAATCGGCCATCGATGAGTCAAGTTCTGCAGCTTCTTGAGCAAGAAGTCATGTCACCGTGTCCAAGCGATTTCTACGAGTCTCATTCTGATTATTCTTGA 1806 41.64 MGILVLIFSALFLATLLSSCSFALTPDGLTLLEIRSTFNDSKNLLSNWEASDESPCKWTGISCHPEDQRVSSINLPYMQLGGIISPTIGKLSRLQRLALHQNSLHGYIPNEIAKCTQLRALYLRSNYLQGGIPSDIGNLSALTILDLSSNSLKGAIPSSIGRLTLLRHLNLSTNFFSGEIPDIGVLSIFKSNSFLGNLDLCGQQVNKPCRTSLGFPAVLPHAASEEATVPVKRSSHYIKGVLIGAMSTMGVALVVLVPFLWIRWLSKKERAAKKYTEVKKQVVHESSTKLITFHGDLPYPSCEIIEKLESLDDEDIVGSGGFGTVYRMVMNDCGTFAVKRIDRSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEPGREKQSLDWSARLNIALGSARGIAYLHHDCCPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFLQRGLNVVGWMNTLLGDNKMEDIVDSRCKDVDADTLEAILEIAAKCTDADPDNRPSMSQVLQLLEQEVMSPCPSDFYESHSDYS 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1800580 1804423 - evm.model.ptg000005l.1233 HCH3g0284 541012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0284 601 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
HCH3g0284 601 SUPERFAMILY Protein kinase-like (PK-like) 292 582 IPR011009 -
HCH3g0284 601 ProSiteProfiles Protein kinase domain profile. 311 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0284 601 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
HCH3g0284 601 Gene3D Phosphorylase Kinase; domain 1 269 386 - -
HCH3g0284 601 SMART serkin_6 311 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0284 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0284 601 Gene3D Ribonuclease Inhibitor 26 211 IPR032675 -
HCH3g0284 601 Pfam Leucine Rich Repeat 166 182 IPR001611 GO:0005515(InterPro)
HCH3g0284 601 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
HCH3g0284 601 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
HCH3g0284 601 Gene3D Transferase(Phosphotransferase) domain 1 387 590 - -
HCH3g0284 601 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 592 - -
HCH3g0284 601 Pfam Protein kinase domain 314 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0284 601 SUPERFAMILY L domain-like 25 208 - -
HCH3g0284 601 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524(InterPro)
HCH3g0284 601 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 180 584 IPR050647 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0970 HCH-Chr12:6943078 HCH3g0284 HCH-Chr3:1800580 5.40E-84 dispersed
HCH3g0284 HCH-Chr3:1800580 HCH4g0034 HCH-Chr4:212341 6.90E-71 dispersed
HCH7g0902 HCH-Chr7:34129620 HCH3g0284 HCH-Chr3:1800580 4.30E-49 dispersed
HCH8g0700 HCH-Chr8:43733049 HCH3g0284 HCH-Chr3:1800580 4.50E-53 dispersed
HCH3g0482 HCH-Chr3:3099229 HCH3g0284 HCH-Chr3:1800580 2.50E-67 transposed
HCH6g1296 HCH-Chr6:47172440 HCH3g0284 HCH-Chr3:1800580 1.90E-134 transposed
HCH13g0752 HCH-Chr13:6690896 HCH3g0284 HCH-Chr3:1800580 9.90E-47 wgd
HCH3g0284 HCH-Chr3:1800580 HCH8g1323 HCH-Chr8:48198566 4.70E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81378 PF00069 Pkinase 4.00E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0284 - - - 0.0