Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0287 ATGGAAGATATGGGGGACAAGCCTGAAGTTTTGGAGGCTGTTTTGAAGGAAGCTGTGGATTTGGAAAATATACCTATTGATGAGGTTTTTGAAAATCTGAGATGTAGCAGAGAGGGTCTTACTAGTGAAGCTGCTGAAGAAAGGTTGAGGATTTTTGGACACAACAAGCTTGAGGAGAAAAAGGAGAGTAAAGTGTTGAAGTTTTTGGGGTTTATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCTATTATGGCTATTGCTCTTGCAAATGGAGGAGGAAAGCCCCCGGATTGGCAAGATTTTGTTGGTATCATTATCCTGCTCATCATCAACTCAACGATCAGTTTTATTGAGGAAAACAATGCGGGAAACGCTGCAGCTGCTCTCATGGCTCGTCTTGCTCCCAAAGCCAAGGTTCTTCGAGATGGAAAGTGGAGCGAGCAAGATGCTTCTGTTTTAGTTCCTGGTGACATAGTCAGTATTAAACTTGGAGACATTATTCCAGCTGATTCGCGTCTTCTGGATGGGGATCCACTAAAAATTGATCAGTCTGCACTTACTGGTGAATCTCTTCCTGTAACAAAAGGTCCTGGTGATGGTGTGTACTCTGGTTCTACCTGTAAGCAAGGAGAGATTGAAGCTGTGGTCATTGCTACTGGTGTCCACACCTTTTTTGGGAAAGCTGCTCATCTTGTTGACTCCACCAATCAAGTGGGTCACTTCCAAAAGGTCTTGACTGCCATAGGGAATTTCTGCATATGTTCAATTGCTGTAGGAATGATAATAGAGATCATTGTCATGTACCCAATTCAGGACCGTGAGTATCGTCCTGGAATTGATAACCTCCTTGTCCTACTGATAGGAGGAATTCCCATAGCCATGCCTACAGTTCTTTCTGTGACAATGGCTATTGGCTCCCATAGGCTAGCACAACAGGGTGCTATCACAAAGAGGATGACTGCTATTGAAGAAATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACAGGAACCCTGACATTGAACAAATTAACCGTCGATAAAAATCTCGTCGAGGTTTTTGGCAAAGGAATTGATGCAGATACTGTGGTTCTAATGGCTGCCCAAGCATCAAGAATTGAAAATCAAGATGCTATAGATACTGCTATTGTTGGGATGCTAGCTGACCCAAAGGAGGCACGTGCTGGCATTCAGGAAGTGCATTTCCTTCCTTTCAATCCTACTGATAAGCGAACGGCATTGACTTACATTGATCACGAGGGCAAGATGCACAGAGTCAGCAAAGGTGCTCCAGAACAGATTCTTAATCTTGCATACAACAAGTCAGAGATTGAGAGAAGAGTTCATGCTGTGATTGATAAATTTGCTGAACGGGGCTTACGTTCGCTTGCTGTAGCATACCAGGAAGTTCCAGAAGGAAGAAAAGAGAGTGCTGGAGGTCCTTGGCAGTTCATGGGCCTCTTGCCTTTGTTTGACCCACCAAGGCATGATAGCGCTGAGACCATAAGGAGGGCTTTAAATCTTGGAGTAAATGTGAAAATGATTACCGGAGATCAACTGGCTATTGGAAAGGAAACTGGACGTAGATTGGGGATGGGAACCAATATGTATCCATCATCTGCTTTGCTTGGACAGGATAAGGACGAGTCCATTGCTGGTTTACCAGTCGATGATTTGATAGAAAAGGCAGACGGTTTTGCCGGTGTATTCCCTGAGCACAAATATGAGATTGTAAAACGCCTGCAAGCTATGAAACATATCTGTGGCATGACGGGTGATGGAGTGAATGATGCTCCTGCGCTTAAAAAGGCAGACATCGGAATAGCTGTTGCAGATGCAACCGATGCTGCGCGTAGTGCTTCTGATATCGTCCTTACCGAACCTGGCCTCAGTGTTATAATCAGCGCTGTTTTGACCAGTCGAGCAATATTTCAAAGGATGAAGAATTACACGATTTATGCGGTTTCCATCACAATCCGTATCGTGCTTGGTTTCATGTTGCTAGCTCTCATTTGGAAATTTGATTTTCCACCTTTCATGGTGCTTATCATTGCCATCCTCAACGATGGTACTATCATGACGATATCCAAGGATCGGGTGAAACCATCGCCCCTGCCAGATAGCTGGAAGCTGGCTGAAATTTTTACTACCGGCGTTGTACTTGGTAGTTACTTGGCAATGATGACGGTCATATTTTTTTGGGCGTCATATAAAACTGACATTTTCCCTCGATTATTTGGGGTGCCAACACTTGAGAAAACAGCTCATGACGACTTTCGTAAGTTAGCCTCGGCTATTTATCTGCAAGTGAGCACTATTAGTCAGGCTCTCATTTTTGTTACACGATCTCGAAGTTGGTCCTTTGTTGAACGTCCTGGATTATTACTCGTAGTGGCTTTTGTGATTGCTCAACTGGTTGCTACTTTGATTGCTGTCTATGCTAATTGGAGCTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTAGTTTGGCTTTATAACATTATCTTTTATATTCCTCTTGATCCCATAAAGTTTGCTATTCGATATGCTTTGAGTGGAAAAGCTTGGGATCTTATGCTTGAGCAAAGGATCGCTTTCACTAGACAAAAAGATTTCGGTAAGGAACAACGAGAGCTTCAATGGGCTCATGCACAAAGAACATTGCACGGGTTGCAACCGCCTGATACTAAGATGTTCACTGAACGGACTCATTTCACAGAACTCAATCACATGGCTGAGGAAGCGAAAAGGAGAGCGGAAATTGCTAGATTGAGAGAACTCCATACCCTGAAAGGTCACGTAGAATCAGTGGTGAGATTAAAGGGTCTCGACATCGAGACAATTCAACAAGCGTACACCGTGTGA 2880 44.03 MEDMGDKPEVLEAVLKEAVDLENIPIDEVFENLRCSREGLTSEAAEERLRIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIIILLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWSEQDASVLVPGDIVSIKLGDIIPADSRLLDGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIIEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFGKGIDADTVVLMAAQASRIENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAYNKSEIERRVHAVIDKFAERGLRSLAVAYQEVPEGRKESAGGPWQFMGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAGLPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGSYLAMMTVIFFWASYKTDIFPRLFGVPTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVVAFVIAQLVATLIAVYANWSFAAIEGIGWGWAGVVWLYNIIFYIPLDPIKFAIRYALSGKAWDLMLEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFTELNHMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1812395 1818308 - evm.model.ptg000005l.1230 HCH3g0287 541015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0287 959 FunFam Plasma membrane ATPase 346 493 - -
HCH3g0287 959 SMART Cation_ATPase_N_a_2 20 92 IPR004014 -
HCH3g0287 959 SUPERFAMILY Calcium ATPase, transduction domain A 137 234 IPR008250 -
HCH3g0287 959 SFLD p-type atpase 316 644 IPR044492 -
HCH3g0287 959 NCBIfam HAD-IC family P-type ATPase 106 352 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH3g0287 959 NCBIfam HAD-IC family P-type ATPase 568 681 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH3g0287 959 Gene3D - 908 959 - -
HCH3g0287 959 ProSitePatterns E1-E2 ATPases phosphorylation site. 336 342 IPR018303 -
HCH3g0287 959 FunFam Plasma membrane ATPase 137 221 - -
HCH3g0287 959 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 856 IPR023298 -
HCH3g0287 959 SFLD Haloacid Dehalogenase 316 644 - -
HCH3g0287 959 Gene3D - 346 493 IPR023299 GO:0000166(InterPro)
HCH3g0287 959 FunFam Plasma membrane ATPase 487 641 - -
HCH3g0287 959 Pfam haloacid dehalogenase-like hydrolase 330 607 - -
HCH3g0287 959 PANTHER CALCIUM-TRANSPORTING ATPASE 22 907 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
HCH3g0287 959 CDD P-type_ATPase_H 39 850 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
HCH3g0287 959 Gene3D - 137 221 - -
HCH3g0287 959 FunFam ATPase 4 plasma membrane-type 587 824 - -
HCH3g0287 959 Gene3D - 331 630 IPR023214 -
HCH3g0287 959 PRINTS P-type cation-transporting ATPase superfamily signature 334 348 - -
HCH3g0287 959 PRINTS P-type cation-transporting ATPase superfamily signature 593 612 - -
HCH3g0287 959 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
HCH3g0287 959 PRINTS P-type cation-transporting ATPase superfamily signature 510 520 - -
HCH3g0287 959 PRINTS P-type cation-transporting ATPase superfamily signature 488 499 - -
HCH3g0287 959 PRINTS P-type cation-transporting ATPase superfamily signature 184 198 - -
HCH3g0287 959 NCBIfam plasma-membrane proton-efflux P-type ATPase 39 815 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
HCH3g0287 959 SUPERFAMILY HAD-like 330 640 IPR036412 -
HCH3g0287 959 Gene3D - 99 824 - -
HCH3g0287 959 Pfam E1-E2 ATPase 135 314 - -
HCH3g0287 959 Pfam Cation transporter/ATPase, N-terminus 23 86 IPR004014 -
HCH3g0287 959 PRINTS H+-transporting ATPase (proton pump) signature 593 609 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH3g0287 959 PRINTS H+-transporting ATPase (proton pump) signature 624 649 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH3g0287 959 PRINTS H+-transporting ATPase (proton pump) signature 769 790 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH3g0287 959 PRINTS H+-transporting ATPase (proton pump) signature 450 468 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH3g0287 959 PRINTS H+-transporting ATPase (proton pump) signature 565 581 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0287 HCH-Chr3:1812395 HCH4g0377 HCH-Chr4:2468768 0.00E+00 dispersed
HCH13g0763 HCH-Chr13:6838516 HCH3g0287 HCH-Chr3:1812395 0.00E+00 wgd
HCH3g0287 HCH-Chr3:1812395 HCH8g1326 HCH-Chr8:48216710 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0287 K01535 - csv:101214920 1781.15