Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0306 ATGGCCGCCTTGCCTTCTTCTTCTGCTTTGCCGGATTCTTCTTCTTCTCGACACCACGCTTATAGTCGTAAACAGAAATCCCTCGGCCTTCTTTGCTCCAATTTCCTCAGCTTATATAACCAAGATGGAATTCACTCCATTGGTTTAGATGATGCTGCTTCAAAATTAGGTGTGGAGAGACGGCGGATCTATGATATTGTTAATGTTTTGGAAAGCGTTGGGGTTCTGTCGAGAAAGGCAAAGAATCAGTATAGTTGGAAGGGTTTTGGGGCCATTCCTAAGGCTTTACAAGATCTTAAGGAAGAGGGTTTGAAGGACAATTGTTGTGCGTCTGATGGAAATGATTATGCTAAAGTTTCGGATGATGAAGATGACGATGAGAGATTTTCTAATCCAACTGGAAGCCAGACCTCAACTGCTGCCGTTCCCAAATCTTCATCTTCGTTAAAAACTGATAACAGAAGGGAGAAGTCGTTGGCGCTCCTCACCCAAAATTTTGTCAAGCTCTTTATTTGCAGTCATGTGGATATGATTTCCTTAGATGAAGCTGCAAGGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACTAAAGTAAGACGGCTATATGACATTGCGAATGTGTTGTCTTCCATGAATCTAATTGAAAAGACCCATACAACAGATACCAGAAAGCCTGCATTTAGATGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGGCTATGACCCTCTCAGAGTCCAGAAAAAGGACATTTGGAACAGACATTACCAATGCCAGTTTCAAGAGGCATAGGGCAGAAAATTCAGTCGATCAGAGTTTTAGTCAAAATCTCAGTATGCAAAAGCACGTGCAGCGTGAGAATTTATCGCAAGAGGGTAGCCAAAACAGTCAAGATCGGGAATGTGGAGGGACTTCCAAGAGCTATCAATTCGGACCCTTTGCTCCTGTAACTGTAGCTAAAGTCGGTGGCTTAGATACTAACAGTGTGAAGCGGCCTCGTGACTGGGAAAGCCTTTCCTCCACATACCGTCCTCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCATGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCAATTCAAATATCTTGA 1143 42.78 MAALPSSSALPDSSSSRHHAYSRKQKSLGLLCSNFLSLYNQDGIHSIGLDDAASKLGVERRRIYDIVNVLESVGVLSRKAKNQYSWKGFGAIPKALQDLKEEGLKDNCCASDGNDYAKVSDDEDDDERFSNPTGSQTSTAAVPKSSSSLKTDNRREKSLALLTQNFVKLFICSHVDMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEAMTLSESRKRTFGTDITNASFKRHRAENSVDQSFSQNLSMQKHVQRENLSQEGSQNSQDRECGGTSKSYQFGPFAPVTVAKVGGLDTNSVKRPRDWESLSSTYRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1929942 1932553 + evm.model.ptg000005l.1211 HCH3g0306 541034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0306 380 MobiDBLite consensus disorder prediction 131 148 - -
HCH3g0306 380 FunFam E2F transcription factor-like E2FE 149 236 - -
HCH3g0306 380 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
HCH3g0306 380 MobiDBLite consensus disorder prediction 284 309 - -
HCH3g0306 380 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH3g0306 380 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH3g0306 380 Gene3D - 149 236 IPR036388 -
HCH3g0306 380 Gene3D - 18 91 IPR036388 -
HCH3g0306 380 FunFam E2F transcription factor 8 18 90 - -
HCH3g0306 380 Pfam E2F/DP family winged-helix DNA-binding domain 155 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH3g0306 380 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH3g0306 380 MobiDBLite consensus disorder prediction 116 153 - -
HCH3g0306 380 MobiDBLite consensus disorder prediction 284 307 - -
HCH3g0306 380 PANTHER TRANSCRIPTION FACTOR E2F 9 353 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
HCH3g0306 380 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0306 HCH-Chr3:1929942 HCH4g0786 HCH-Chr4:5086366 1.20E-07 dispersed
HCH3g0306 HCH-Chr3:1929942 HCH9g0455 HCH-Chr9:2913522 1.50E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33302 PF02319 E2F_TDP 5.30E-20 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0306 K09391 - csv:101219210 653.669