Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0306 ATGGCCGCCTTGCCTTCTTCTTCTGCTTTGCCGGATTCTTCTTCTTCTCGACACCACGCTTATAGTCGTAAACAGAAATCCCTCGGCCTTCTTTGCTCCAATTTCCTCAGCTTATATAACCAAGATGGAATTCACTCCATTGGTTTAGATGATGCTGCTTCAAAATTAGGTGTGGAGAGACGGCGGATCTATGATATTGTTAATGTTTTGGAAAGCGTTGGGGTTCTGTCGAGAAAGGCAAAGAATCAGTATAGTTGGAAGGGTTTTGGGGCCATTCCTAAGGCTTTACAAGATCTTAAGGAAGAGGGTTTGAAGGACAATTGTTGTGCGTCTGATGGAAATGATTATGCTAAAGTTTCGGATGATGAAGATGACGATGAGAGATTTTCTAATCCAACTGGAAGCCAGACCTCAACTGCTGCCGTTCCCAAATCTTCATCTTCGTTAAAAACTGATAACAGAAGGGAGAAGTCGTTGGCGCTCCTCACCCAAAATTTTGTCAAGCTCTTTATTTGCAGTCATGTGGATATGATTTCCTTAGATGAAGCTGCAAGGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACTAAAGTAAGACGGCTATATGACATTGCGAATGTGTTGTCTTCCATGAATCTAATTGAAAAGACCCATACAACAGATACCAGAAAGCCTGCATTTAGATGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGGCTATGACCCTCTCAGAGTCCAGAAAAAGGACATTTGGAACAGACATTACCAATGCCAGTTTCAAGAGGCATAGGGCAGAAAATTCAGTCGATCAGAGTTTTAGTCAAAATCTCAGTATGCAAAAGCACGTGCAGCGTGAGAATTTATCGCAAGAGGGTAGCCAAAACAGTCAAGATCGGGAATGTGGAGGGACTTCCAAGAGCTATCAATTCGGACCCTTTGCTCCTGTAACTGTAGCTAAAGTCGGTGGCTTAGATACTAACAGTGTGAAGCGGCCTCGTGACTGGGAAAGCCTTTCCTCCACATACCGTCCTCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCATGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCAATTCAAATATCTTGA 1143 42.78 MAALPSSSALPDSSSSRHHAYSRKQKSLGLLCSNFLSLYNQDGIHSIGLDDAASKLGVERRRIYDIVNVLESVGVLSRKAKNQYSWKGFGAIPKALQDLKEEGLKDNCCASDGNDYAKVSDDEDDDERFSNPTGSQTSTAAVPKSSSSLKTDNRREKSLALLTQNFVKLFICSHVDMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEAMTLSESRKRTFGTDITNASFKRHRAENSVDQSFSQNLSMQKHVQRENLSQEGSQNSQDRECGGTSKSYQFGPFAPVTVAKVGGLDTNSVKRPRDWESLSSTYRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1929942 1932553 + evm.model.ptg000005l.1211 HCH3g0306 541034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0306 380 MobiDBLite consensus disorder prediction 131 148 - -
HCH3g0306 380 FunFam E2F transcription factor-like E2FE 149 236 - -
HCH3g0306 380 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
HCH3g0306 380 MobiDBLite consensus disorder prediction 284 309 - -
HCH3g0306 380 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH3g0306 380 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH3g0306 380 Gene3D - 149 236 IPR036388 -
HCH3g0306 380 Gene3D - 18 91 IPR036388 -
HCH3g0306 380 FunFam E2F transcription factor 8 18 90 - -
HCH3g0306 380 Pfam E2F/DP family winged-helix DNA-binding domain 155 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH3g0306 380 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH3g0306 380 MobiDBLite consensus disorder prediction 116 153 - -
HCH3g0306 380 MobiDBLite consensus disorder prediction 284 307 - -
HCH3g0306 380 PANTHER TRANSCRIPTION FACTOR E2F 9 353 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
HCH3g0306 380 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0306 K09391 - - csv:101219210 653.669
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0306 HCH-Chr3:1929942 HCH4g0786 HCH-Chr4:5086366 1.20E-07 dispersed
HCH3g0306 HCH-Chr3:1929942 HCH9g0455 HCH-Chr9:2913522 1.50E-10 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0306 . 3 375 E2F-DP Transcription Factor Family AT3G48160 57.8 6.2e-108 387.9
HCH11g1000 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 5.0e-59 224.9
HCH2g1292 . 14 457 E2F-DP Transcription Factor Family AT2G36010 52.5 5.1e-117 418.3
HCH9g0455 . 14 433 E2F-DP Transcription Factor Family AT2G36010 55.1 2.5e-116 416.0
HCH2g1292 . 22 462 E2F-DP Transcription Factor Family AT5G22220 55.8 2.3e-114 409.5
HCH4g0786 . 127 390 E2F-DP Transcription Factor Family AT1G47870 51.3 2.4e-64 243.0
HCH11g1000 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 5.0e-59 224.9
HCH2g1292 . 22 462 E2F-DP Transcription Factor Family AT5G22220 55.8 2.3e-114 409.5
HCH2g1292 . 14 457 E2F-DP Transcription Factor Family AT2G36010 52.5 5.1e-117 418.3
HCH9g0455 . 14 433 E2F-DP Transcription Factor Family AT2G36010 55.1 2.5e-116 416.0
HCH4g0786 . 127 390 E2F-DP Transcription Factor Family AT1G47870 51.3 2.4e-64 243.0
HCH3g0306 . 3 375 E2F-DP Transcription Factor Family AT3G48160 57.8 6.2e-108 387.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33302 PF02319 E2F_TDP 5.30E-20 CL0123 HCH TF