Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0311 ATGGCTTTTCCTTCTCTTCTCTTCCTTCTCTTCCTCTCCATTCCCTTCTCTGCTGAATCCAAACTCACCCTCGATTACTACAAGAAAACTTGCCCTAATTTCCAAAACATCATCCGCGACACCGTCACCAATAAGCAAATCACCAGCCCTGTTACCGCCGCCGGCACCCTCCGACTCTTCTTCCACGACTGCATGGTTGATGGCTGCGACGCTTCCGTCCTTATCTCTTCCAATACTTTTAACCATGCAGAGCGTGAATCTGATATCAACCACTCCCTCTCCGGCGATGCCTTCGACGTTATCGTCCGTGCCAAGACTGCCCTCGAGCTCTCTTGCCCCGGCATTGTCTCTTGCTCCGACATCTTAGCTCAAGCAACACGTGACCTAGTTGTCATGGTGGGAGGTCCCTTCTACAATGTCCGGTTAGGGCGTAAAGATGGCCTCGCTTCCAAATTCAGCGACGTCGAAGCAAACCTTCCGAGAGTGAACCACACCCTAGACCAAATGATCAAGCTTTTCAGCTCCAAAGGCTTCACTATCCAAGATTTGGTGGTGCTCTCCGGCGGCCACACCATCGGTTTCTCTCATTGTAAGGAATTCACCGACCGGCTTTTCCATCACAGCAAGACGGTAGCTACGGATCCCGACATCCACCCGAAGTTCGCGGCGAAACTCAAGGAGATGTGTGCGAATTACCAGAAGGACACAGACATGTCGGCGTTCAACGACGTCATGACGCCGGGAAAGTTCGATAACATGTATTACCAGAATCTGCAGAGAGGGTTGGGGCTGCTGTCGACGGACAATGTGCTGGTGAAGGACCCAAGGACGAAGCCGTTTGTGGATTTGTACGCTGTGAACCAGACGGCATTTTTCCATGACTTCGCTCACAGCATGGAAAAGCTTAGCGTTTTTGGCATTAAGACAGGACGTAAAGGGGAGGTGCGACGAAAGTGTGATGTGTTCAATTCGATAAAGACATGA 984 51.02 MAFPSLLFLLFLSIPFSAESKLTLDYYKKTCPNFQNIIRDTVTNKQITSPVTAAGTLRLFFHDCMVDGCDASVLISSNTFNHAERESDINHSLSGDAFDVIVRAKTALELSCPGIVSCSDILAQATRDLVVMVGGPFYNVRLGRKDGLASKFSDVEANLPRVNHTLDQMIKLFSSKGFTIQDLVVLSGGHTIGFSHCKEFTDRLFHHSKTVATDPDIHPKFAAKLKEMCANYQKDTDMSAFNDVMTPGKFDNMYYQNLQRGLGLLSTDNVLVKDPRTKPFVDLYAVNQTAFFHDFAHSMEKLSVFGIKTGRKGEVRRKCDVFNSIKT 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1968209 1969192 - evm.model.ptg000005l.1206 HCH3g0311 541039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0311 327 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601(InterPro)
HCH3g0311 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
HCH3g0311 327 Gene3D - 25 323 - -
HCH3g0311 327 Gene3D Peroxidase, domain 2 160 302 - -
HCH3g0311 327 FunFam Peroxidase 25 171 - -
HCH3g0311 327 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 PANTHER - 9 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 CDD secretory_peroxidase 21 322 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH3g0311 327 FunFam Peroxidase 160 302 - -
HCH3g0311 327 Pfam Peroxidase 39 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 SUPERFAMILY Heme-dependent peroxidases 22 323 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g0311 327 ProSiteProfiles Plant heme peroxidase family profile. 21 323 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0352 HCH-Chr14:32436022 HCH3g0311 HCH-Chr3:1968209 1.00E-76 dispersed
HCH3g0311 HCH-Chr3:1968209 HCH3g0684 HCH-Chr3:4827869 2.30E-73 dispersed
HCH12g0304 HCH-Chr12:1734955 HCH3g0311 HCH-Chr3:1968209 1.40E-65 transposed
HCH13g0794 HCH-Chr13:7615056 HCH3g0311 HCH-Chr3:1968209 1.70E-103 wgd
HCH3g0311 HCH-Chr3:1968209 HCH8g1358 HCH-Chr8:48399689 1.20E-138 wgd
HCH3g0311 HCH-Chr3:1968209 HCH9g0176 HCH-Chr9:1044251 2.00E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0311 K00430 - csv:101220163 533.102