Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0333 ATGGCTATGCGAGGACTCGATTTCAAATGGTATGATGGATTCTTCTTGTCTATGCTTGCTACTAGCATAATAATTGTGGCCATCAATTGGAAGAGGTACCATACTTGTACTTACCCATTGCACATATGGATTGTGGTTGATTATACCTCGGTGTTTGCTTTCCGTCTTCTGCTGTTCATAGATAATGGGCTTGCAGCTGGAATGGGATTGGATTTCGGGTGGCAGCAGAGATATGCTCGTTTTTGTGGACGAGTTGTGGTTCTTTCTATTCTTTCTTTATTGCTCTACCCGTTTTTATGTGCGTGGACTGTAATCGGTACCTTGTGGTTTAGAGATGCTAAAGACTGTTTACCTGAAGAAGGTCAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTATTGTGCCCTTCTTTGCATTGCTTGCATGTCTGTGGGAAAGTGGCTGGCGCGTAGACAAGCACATGTATTACGTGCCCAACAAGGTATACCAGTATCAGAATATGGGGTATTGGTTGACATGATTAGGGTTCCAGATTGGGCATTTGAAGCTGCAGGACAAGAAACAAGAGGCATGGGCCAAGATGCTGCTGGATATCATCCTGGGCTCTTCTTAACCCCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCGAAGTTCAGGTTAAAGGCCGTCCCAACCGATTGCAGTGAATGCCCTATTTGCCTCGAAGAATTCCATGTAGGAAATGAGGTTCGTGGTATGCCTTGTGCTCACAATTTCCATGTAGAGTGTATCGACGAGTGGCTTCGTCTAAACGTTAAATGTCCACGGTGCCGCTCGTCCGTCTTCCCGAATCTTGACCTTAGTGCACTATCTAACCTTCATACTGATACTGAACAAACAGCTGCTAGTGTTCCAACTGCCAATAGTAATGTCATAAGCCAACCTTCAAGCCAGAGCTCTCTGTTGAGATTGCAGACTCCAAGTCCCCCAGTTCATACAGAGAATGCAGCAGCCTTTGATATCGACGCTGCCTTAGATGCGGCAGAGAACGGGACGGCACCTGTAACATCTGCTTCTCGACATTGA 1080 46.3 MAMRGLDFKWYDGFFLSMLATSIIIVAINWKRYHTCTYPLHIWIVVDYTSVFAFRLLLFIDNGLAAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHVLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAGYHPGLFLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHTDTEQTAASVPTANSNVISQPSSQSSLLRLQTPSPPVHTENAAAFDIDAALDAAENGTAPVTSASRH 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2097053 2100395 + evm.model.ptg000005l.1184 HCH3g0333 541061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0333 359 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
HCH3g0333 359 SMART ring_2 235 275 IPR001841 -
HCH3g0333 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 358 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
HCH3g0333 359 MobiDBLite consensus disorder prediction 298 327 - -
HCH3g0333 359 Pfam Ring finger domain 234 276 IPR001841 -
HCH3g0333 359 SUPERFAMILY RING/U-box 217 284 - -
HCH3g0333 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 281 IPR013083 -
HCH3g0333 359 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0333 HCH-Chr3:2097053 HCH4g0178 HCH-Chr4:1026724 3.70E-11 dispersed
HCH3g0333 HCH-Chr3:2097053 HCH8g1380 HCH-Chr8:48524137 6.00E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0333 K16284 - csv:101222360 617.461