Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0334 ATGAAGAATTTAAACTGGTTTAAGCCAATTTCAATCAATGGAAAGCCTGGGAGAAGACTTTCACTTGGAGAGTATGAGAGGGCAGTATCATGGTCTAAATATTTGGTTTCATCGGGAGCTGAGATAAAAGGAGAGGGAGAAGAAGAATGGAGTGCTGATATGTCTCAATTGTTTATTGGATTTAAATTTGCTACAGGAAGGCATAGTAGAATCTATAGAGGGGTTTATAAGCAGAGAGATGTTGCAATTAAACTGATAAGTCAGCCTGAAGAGGATGAAAATTTGGCTTCTTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTCTTTAGACTTTGCCATCCTAATATCATCACTTTCATTGCAGCTTGTAAGAAACCTCCCGTGTTTTGTATTATCACGGAGTACATGGCAGGCGGTTCGTTAAGAAAATATCTCCATCAGCAGGAGCCACATTCCGTTCCACTCAACTTGGTTCTGAAACTAGCCCTTGACATCTCTCGTGGGATGCAATATCTTCATTCTCAGGGAATACTTCATAGAGATCTCAAATCAGAGAATCTTTTACTTGGTGAAGATATGTGTGTGAAGGTAGCAGATTTTGGTATCTCCTGCTTAGAAACTCAGTGTGGAAGCTCAAAGGGATTCACTGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACATCACACGAAGAAAGTGGATGTTTATAGCTTTGGAATCGTCTTGTGGGAGCTTTTAACTGCATTGACTCCGTTCGATAACATGACTCCTGAACAGGCAGCATTTGCAGTGTGCCAAAAGAATGCAAGACCACCTTTGCCTTCTGCATGCCCCATGGCATTCCGTCATCTGATCAAGAGATGTTGGTCGAAAAATCCAGAGAGGCGGCCGCATTTTGATGAAATCGTGTCGATCTTAGAAACTTACATGGAGTCCTATGCCGAAGATCCAGAGTTTTTCTCTCATTATGACCCCTCATCCAATTATATTGGCTTACAGTGCTTACCGAAATGTATTACGAAACGAATGTGTGCTTCTTTGAAGCCTAGAAATTCATCTTCTTGA 1080 41.2 MKNLNWFKPISINGKPGRRLSLGEYERAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLASFLENQFISEVALLFRLCHPNIITFIAACKKPPVFCIITEYMAGGSLRKYLHQQEPHSVPLNLVLKLALDISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLETQCGSSKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPMAFRHLIKRCWSKNPERRPHFDEIVSILETYMESYAEDPEFFSHYDPSSNYIGLQCLPKCITKRMCASLKPRNSSS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2105615 2107879 + evm.model.ptg000005l.1183 HCH3g0334 541062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0334 359 Pfam Protein tyrosine and serine/threonine kinase 63 311 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0334 359 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0334 359 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0334 359 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0334 359 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0334 359 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0334 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0334 359 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0334 359 Gene3D Transferase(Phosphotransferase) domain 1 140 337 - -
HCH3g0334 359 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
HCH3g0334 359 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
HCH3g0334 359 SMART serkin_6 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0334 359 CDD STKc_MAP3K-like 66 311 - -
HCH3g0334 359 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
HCH3g0334 359 PANTHER SERINE-THREONINE PROTEIN KINASE 55 315 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0779 HCH-Chr14:35874416 HCH3g0334 HCH-Chr3:2105615 1.00E-109 dispersed
HCH14g0919 HCH-Chr14:36800481 HCH3g0334 HCH-Chr3:2105615 3.30E-95 dispersed
HCH3g0334 HCH-Chr3:2105615 HCH8g1383 HCH-Chr8:48541098 1.50E-174 dispersed
HCH7g1259 HCH-Chr7:45438529 HCH3g0334 HCH-Chr3:2105615 1.50E-18 transposed
HCH3g0334 HCH-Chr3:2105615 HCH9g0151 HCH-Chr9:875802 1.90E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81380 PF07714 PK_Tyr_Ser-Thr 5.30E-65 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0334 - - - 0.0