Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH3g0334 | ATGAAGAATTTAAACTGGTTTAAGCCAATTTCAATCAATGGAAAGCCTGGGAGAAGACTTTCACTTGGAGAGTATGAGAGGGCAGTATCATGGTCTAAATATTTGGTTTCATCGGGAGCTGAGATAAAAGGAGAGGGAGAAGAAGAATGGAGTGCTGATATGTCTCAATTGTTTATTGGATTTAAATTTGCTACAGGAAGGCATAGTAGAATCTATAGAGGGGTTTATAAGCAGAGAGATGTTGCAATTAAACTGATAAGTCAGCCTGAAGAGGATGAAAATTTGGCTTCTTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTCTTTAGACTTTGCCATCCTAATATCATCACTTTCATTGCAGCTTGTAAGAAACCTCCCGTGTTTTGTATTATCACGGAGTACATGGCAGGCGGTTCGTTAAGAAAATATCTCCATCAGCAGGAGCCACATTCCGTTCCACTCAACTTGGTTCTGAAACTAGCCCTTGACATCTCTCGTGGGATGCAATATCTTCATTCTCAGGGAATACTTCATAGAGATCTCAAATCAGAGAATCTTTTACTTGGTGAAGATATGTGTGTGAAGGTAGCAGATTTTGGTATCTCCTGCTTAGAAACTCAGTGTGGAAGCTCAAAGGGATTCACTGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACATCACACGAAGAAAGTGGATGTTTATAGCTTTGGAATCGTCTTGTGGGAGCTTTTAACTGCATTGACTCCGTTCGATAACATGACTCCTGAACAGGCAGCATTTGCAGTGTGCCAAAAGAATGCAAGACCACCTTTGCCTTCTGCATGCCCCATGGCATTCCGTCATCTGATCAAGAGATGTTGGTCGAAAAATCCAGAGAGGCGGCCGCATTTTGATGAAATCGTGTCGATCTTAGAAACTTACATGGAGTCCTATGCCGAAGATCCAGAGTTTTTCTCTCATTATGACCCCTCATCCAATTATATTGGCTTACAGTGCTTACCGAAATGTATTACGAAACGAATGTGTGCTTCTTTGAAGCCTAGAAATTCATCTTCTTGA | 1080 | 41.2 | MKNLNWFKPISINGKPGRRLSLGEYERAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLASFLENQFISEVALLFRLCHPNIITFIAACKKPPVFCIITEYMAGGSLRKYLHQQEPHSVPLNLVLKLALDISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLETQCGSSKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPMAFRHLIKRCWSKNPERRPHFDEIVSILETYMESYAEDPEFFSHYDPSSNYIGLQCLPKCITKRMCASLKPRNSSS | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2105615 | 2107879 | + | evm.model.ptg000005l.1183 | HCH3g0334 | 541062 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH3g0334 | 359 | Pfam | Protein tyrosine and serine/threonine kinase | 63 | 311 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH3g0334 | 359 | PRINTS | Tyrosine kinase catalytic domain signature | 173 | 191 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH3g0334 | 359 | PRINTS | Tyrosine kinase catalytic domain signature | 135 | 148 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH3g0334 | 359 | PRINTS | Tyrosine kinase catalytic domain signature | 282 | 304 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH3g0334 | 359 | PRINTS | Tyrosine kinase catalytic domain signature | 238 | 260 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH3g0334 | 359 | PRINTS | Tyrosine kinase catalytic domain signature | 219 | 229 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH3g0334 | 359 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 179 | 191 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH3g0334 | 359 | ProSiteProfiles | Protein kinase domain profile. | 57 | 315 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH3g0334 | 359 | Gene3D | Transferase(Phosphotransferase) domain 1 | 140 | 337 | - | - | |
HCH3g0334 | 359 | FunFam | Serine/threonine-protein kinase isoform 1 | 47 | 139 | - | - | |
HCH3g0334 | 359 | SUPERFAMILY | Protein kinase-like (PK-like) | 47 | 311 | IPR011009 | - | |
HCH3g0334 | 359 | SMART | serkin_6 | 57 | 315 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH3g0334 | 359 | CDD | STKc_MAP3K-like | 66 | 311 | - | - | |
HCH3g0334 | 359 | Gene3D | Phosphorylase Kinase; domain 1 | 47 | 139 | - | - | |
HCH3g0334 | 359 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 55 | 315 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0779 | HCH-Chr14:35874416 | HCH3g0334 | HCH-Chr3:2105615 | 1.00E-109 | dispersed | |
HCH14g0919 | HCH-Chr14:36800481 | HCH3g0334 | HCH-Chr3:2105615 | 3.30E-95 | dispersed | |
HCH3g0334 | HCH-Chr3:2105615 | HCH8g1383 | HCH-Chr8:48541098 | 1.50E-174 | dispersed | |
HCH7g1259 | HCH-Chr7:45438529 | HCH3g0334 | HCH-Chr3:2105615 | 1.50E-18 | transposed | |
HCH3g0334 | HCH-Chr3:2105615 | HCH9g0151 | HCH-Chr9:875802 | 1.90E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81380 | PF07714 | PK_Tyr_Ser-Thr | 5.30E-65 | CL0016 | HCH | PK |
Pathway information
