Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0342 ATGGAAGAAACGTTTTTTCCCTTCCGTGGGATTAAGAATGATCTAAGAGGAAGGCTTATGTGCTATAAACAGGATTGGAGTGGTGGTTTTCACTCTGGTATCAGGATCTTGGCTCCAACAACTTACATATTCTTTGCTTCAGCAATTCCGGTTATATCTTTCGGGGAGCAGCTAGAAAGGAATACATATGGAACTCTGACTGCAGTACAAACTCTGGCATCAACAGCACTTTGTGGCATCATCCACTCTATTTTTGGAGGTCAGCCTTTACTCATCCTTGGGGTTGCTGAGCCAACTGTTTTGATGTATACATTTATGTTCAACTTTGCAAAAGATCGAAAGGAGCTCGGGCAAGAACTATTCTTAGCCTGGACCGGATGGGTATGTGTGTGGACTGCCATTTTGCTCTTCTTGCTGGCTGTGTTGGGTGCATGCTCCCTGATTAATAGGTTTACCCGTCTTGCTGGAGAATTGTTCGGTCTCCTAATTGCTATGCTCTTTATGCAGCAGGCAATACGTGGTGTTGTAGAAGAGTTTGGCGTACCGCAGAGAGAAAATTCTAATCAGGTTGCCCTCCAACTTCCTTGGCGCTTTGGCAACGGAATGTTTGCTTTGGTGCTGTCCTTTGGGCTTCTTCTTACTGCACTTAAAAGCCGAAAAGCTAGATCATGGCGTTATGGGACTGGCTGCCTACGAGGCTTTATCGCGGATTATGGAGTTCCACTTATGGTGCTCATATGGACTGCCGTATCCTACATTCCAGTGAATGATGTCCCAACTGGGATCCCAAGAAGGCTTTTCAGTCCCAATCCATGGTCTCACGGCGCCTACTCAAATTGGACAGTTATAAAGGAAATGTTGAAAGTGCCTCCACTGTATATAGTTGGAGCATTCATACCAGCGACCATGATAGCGGTGCTATACTACTTCGATCACAGTGTTGCATCTCAACTTTCACAGCAGAAAGAGTTTAATTTGAAAAAACCAGCTTCTTATCATTATGATCTCCTTCTCCTGGGTTTCCTTGTTATACTGTGTGGACTAATAGGCATTCCACCCGCCAATGGCGTAATCCCACAGTCTCCAATGCACACGAAAAGCTTGGCTACCCTGAAACATCAGCTTTTGCGGAACAAGCTGGTAGTAGCAGCACGACAAAGTATCCGTAAAAATTCAAACTTGAGCCAATTATACCGGAACATGCAAGAGGCATATAACGAAATGCAGACACCTTTAGTATACCAAAATCCACCAGCTGTGGGGCTGAAGGAATTAAAAGAGTCCACCGTCCAACAAGCTTCAAGAACTGGCTACATTGATGCCCCCGTTGATGAAACTATTTTCGATGTGGATAAAGATATCGATGATCTTTTGCCTGTGGAAGTTAAAGAACAGCGTCTCAGCAATTTACTCCAGGCAACGATGGTCGGCTGTTGTGTTGCCGCTATGCCTGTTTTAAAGAAGATCCCAACTTCAGTTCTTTGGGGCTACTTCGCTTTCATGGCAATTGAAAGCTTGCCCGGAAATCAATTCTGGGAAAGGATTTTGCTGCTGTTTACTGCTCCAAGCCGAAGATACAAGGTGCTGGAGAAATATCATCCCACCTTTCTGGAAACTGTTCCCTTCAAAACAATTGTCACCTTCACCTTGTTCCAGACAATTTACTTGCTGATGTGCTTTGGTTTAACCTGGATTCCAATTGCTGGCGTTCTCTTTCCACTGTTGATCATGCTTCTTGTCCCTGTGCGGCAGTATTTGCTCCCCAAGTTCTTCAAAGGCGCTCATCTTCAGGATCTGGATGCTGCAGAATACGAGGATGCCCCGGCAATAGCTTTCAACTCATCATTTGAAGATCGTAATGGAAGAACTCCCAACATTGACAATGGTGAAATACTTGATGAGATGATCACAAGAAGCCGTGGTGAGATTCGGCGTACACAGAGTCCGAAAGTGACAAGTTCGACCACCCCGACTTCATTAGCTGCCTACAGCCCACAGGTGTCAGAGAGGTTATACAGTCCTCGGATCACTGAACTGAGAAGGGAGAGAAGTTCTCTATCACCTGGAAAAGGACTTGAATTGAAGCAAAGTCCCAGTCCAGATCCAGGACCATCTACTATATAA 2124 45.1 MEETFFPFRGIKNDLRGRLMCYKQDWSGGFHSGIRILAPTTYIFFASAIPVISFGEQLERNTYGTLTAVQTLASTALCGIIHSIFGGQPLLILGVAEPTVLMYTFMFNFAKDRKELGQELFLAWTGWVCVWTAILLFLLAVLGACSLINRFTRLAGELFGLLIAMLFMQQAIRGVVEEFGVPQRENSNQVALQLPWRFGNGMFALVLSFGLLLTALKSRKARSWRYGTGCLRGFIADYGVPLMVLIWTAVSYIPVNDVPTGIPRRLFSPNPWSHGAYSNWTVIKEMLKVPPLYIVGAFIPATMIAVLYYFDHSVASQLSQQKEFNLKKPASYHYDLLLLGFLVILCGLIGIPPANGVIPQSPMHTKSLATLKHQLLRNKLVVAARQSIRKNSNLSQLYRNMQEAYNEMQTPLVYQNPPAVGLKELKESTVQQASRTGYIDAPVDETIFDVDKDIDDLLPVEVKEQRLSNLLQATMVGCCVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEKYHPTFLETVPFKTIVTFTLFQTIYLLMCFGLTWIPIAGVLFPLLIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEDAPAIAFNSSFEDRNGRTPNIDNGEILDEMITRSRGEIRRTQSPKVTSSTTPTSLAAYSPQVSERLYSPRITELRRERSSLSPGKGLELKQSPSPDPGPSTI 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2188633 2192448 + evm.model.ptg000005l.1175 HCH3g0342 541070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0342 707 FunFam probable boron transporter 2 18 60 - -
HCH3g0342 707 MobiDBLite consensus disorder prediction 638 707 - -
HCH3g0342 707 Pfam HCO3- transporter integral membrane domain 7 181 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
HCH3g0342 707 Pfam HCO3- transporter integral membrane domain 202 372 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
HCH3g0342 707 Pfam HCO3- transporter integral membrane domain 460 602 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
HCH3g0342 707 MobiDBLite consensus disorder prediction 646 666 - -
HCH3g0342 707 MobiDBLite consensus disorder prediction 674 688 - -
HCH3g0342 707 Gene3D Helical hairpin bin 18 60 - -
HCH3g0342 707 PANTHER ANION EXCHANGE PROTEIN 6 638 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0342 HCH-Chr3:2188633 HCH6g0432 HCH-Chr6:11121183 2.0e-311 dispersed
HCH3g0342 HCH-Chr3:2188633 HCH6g0199 HCH-Chr6:2666437 5.00E-222 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0342 K24194 - csv:101203606 1284.24