Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0343 ATGCAAAGCTCTTCTCTCACCTTCTCTCCTTCTCTCTCTCTCCTCAAGCCTCGTAGACCTTCTAATTCCACTTTCACCTCTGGATTTACCTCTATTCGAAATTCCTCCTCTTCTTCCTCTAATTCCAAAGATATCGGAACCCTAAATAATGCAAGTTTCTCTTCCTCTTGGCCTCAACGATCTTGGACTCTTTCATCTTCTCCTTTCGCTTCCTCCAAACTCAAGCCATGGACTGGCGTTCCGTTGCTTGATTCCGATTTCGATGCGAATCGTTTCAAACTTCAGGCCACGGCGGTTCCCGAGAGTGCCGGTGAGAGCCGTGACATTAGGAAAACGGTGGAGCTTGGATTGCTGTTTGGCTTTTGGTACCTTTTCAATATCTACTTTAACATCTATAATAAGCAGGTTCTGAAGGTGTATCCATACCCTGTAACCGTCACTGCAATTCAATTTACTGTTGGCACTGTAATCGTTCTTCTAATGTGGGGACTTAATCTCTACAAAAAGCCGAAGCTCAGTGGTGCTCAGCTTGCTGCTATTCTTCCATTGGCATTCGTTCACGTGTTAGGAAATCTTTTTACAAATATGAGTCTTGGGAAAGTAGCTGTATCATTCACTCACACTATCAAAGCTATGGAGCCATTTTTTTCAGTTATCCTTTCTGCTATGTTTCTTGGAGAGATTCCTACTCCCTGGGTTGTTGCATCCCTTCTGCCCATTGTTGGTGGGGTTGTATTGGCATCTGCCACTGAAGCCTCTTTCAACTGGGCTGGATTTTCGAGTGCAATGGCCTCCAATTTGACTAATCAATCACGTAATGTCCTCAGCAAAAAAGTCATGGTAAATAAAGAGAAATCGATTGACAACATCACCCTCTTTTCAGTCATAACAATCATGTCCTTTTTCTTATTGGCCCCTGTGGCTCTCTTCATGGACGGTGTGAAGTTTACTCCAGCATACCTTCAATCAGCTGGGTTGAATGTGAATCAAGTGTTTACGAGGTCTCTTCTTGCCGCTCTTTGTTTCCATGCATACCAACAGGTTTCTTACATGATATTGCAAAGGGTATCACCTGTAACCCACTCAGTAGGCAATTGTGTAAAGCGTGTCGTGGTCATCGTGAGCTCTGTTATCTTTTTCCAGACACCCGTTTCTCCTATCAACTCTATCGGCACTGGAGTAGCTCTTGCTGGGGTTTTCCTGTATTCGAGGGTTAAGCGCATCAAAGCTAAGCCGAAGGCAGCTTAA 1248 44.23 MQSSSLTFSPSLSLLKPRRPSNSTFTSGFTSIRNSSSSSSNSKDIGTLNNASFSSSWPQRSWTLSSSPFASSKLKPWTGVPLLDSDFDANRFKLQATAVPESAGESRDIRKTVELGLLFGFWYLFNIYFNIYNKQVLKVYPYPVTVTAIQFTVGTVIVLLMWGLNLYKKPKLSGAQLAAILPLAFVHVLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGEIPTPWVVASLLPIVGGVVLASATEASFNWAGFSSAMASNLTNQSRNVLSKKVMVNKEKSIDNITLFSVITIMSFFLLAPVALFMDGVKFTPAYLQSAGLNVNQVFTRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSIGTGVALAGVFLYSRVKRIKAKPKAA 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2193587 2196599 - evm.model.ptg000005l.1174 HCH3g0343 541071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0343 415 Pfam Triose-phosphate Transporter family 114 403 IPR004853 -
HCH3g0343 415 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 114 413 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
HCH3g0343 415 PANTHER SOLUTE CARRIER FAMILY 35 111 404 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
HCH3g0343 415 SUPERFAMILY Multidrug resistance efflux transporter EmrE 327 406 - -
HCH3g0343 415 SUPERFAMILY Multidrug resistance efflux transporter EmrE 158 248 - -
HCH3g0343 415 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0343 HCH-Chr3:2193587 HCH7g1518 HCH-Chr7:47715233 3.90E-57 dispersed
HCH13g0833 HCH-Chr13:8411107 HCH3g0343 HCH-Chr3:2193587 1.30E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0343 K15283 - csv:101203848 670.233