Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0350 ATGCAACTTCCAATCAATATCCCACAGAACCCAGTGTGGGCATTGGTTGGATTTTTCATTTTCTTGTCATTATCATCATTTCCTCTCGTCGTTTCAAAAAATCCCGACGTGGGTATAATTTGTGGAAGAAACCTTAGCATCAACGCCAATGTAGGTTCCAACGTAGGACGAATCATGGACATAATTTCCACCATGATCGACGCATCCCAATGGGGTTATCACAACGCGTCTATCCCTCACGCGCGCATTTACGCCTTTAGCCAGTGCTACACCGGTCTCTCGCAGGAAGATTGCTCGGAGTGTTTCCGACGGTCACGTAGGAGAATCAATCAATGTCTTCCTGACCGGACCGGTCGTGTTTATCGCGACGGTTGTTATCTGCGTTACGACAAATATGATTTCTTTAAGGAAAGTGTTAATCATAGATTCGACCAAATCAAATGTGGTTCCCTGACAGATAATGCCGATGACGTCGTTATAAAAAAGGAGTTTGCGAATAGGGTTCATCGTGTGATAACTAACGTGACGAATACGGCATTGGTGAATAACGGTTTTGCCGTTATGGAAGAGAGAGGAGGTGTGGACGGTATTTATGCCATTGCACAATGTTGGAAAACGGTCAGTGAAGAAGGCTGTAGTAAATGTTTAACACATGCGGTTTCTGCTATCGCTAAAGGATGTGTTTCAGCTAAAGAAGGACAGGCTTTATATGCGGGTTGTTATGTGAAATATTCTACTGAAAGATTCTTCAATATTAGAGATATGGATGTTGATGTTAAAGAAAAGGACTTTAGAATCGGATTCGTCGTGGCGGGTTGGCTTTCGTTGTTTTCGTTGCTGCTTCTTGCATTCTTTGGTGCTCATTTAGGATATATGAAGCTTTCATTGATAAAAAAAAAAGAGGTTAATAACAATGCGACTAAAGCTAGTGAGTACACTTCCAAAACGAATTTCAAGTATGAAGTGCTCGAGAAAGCGACCGATTCGTTTCATGTGTCGAGGAAATTAGGCCAAGGTGGAGCTGGTTCTGTTTATAAGGGGATTTTCCCTGATGGGAAGATTGTTGCAGTGAAAAGATTGTTCTTTACGAACCGACAATGGGCGGATGAATTCTTCAATGAGGTTAACTTGATTGGTGGAATTCAGCACAAGAACTTAGTGAAACTTTTGGGATGCAGTATTGAAGGTCCTGAAAGTCTTCTGGTTTATGAATATGTACCTAACAAAAGCCTTAATCAAGTCCTTTTTGCCACGAACACAAGCATGATTCTAAGTTGGAAGCAGAGGTTTGATATCGTCCTTGGAATAGCTGAGGGCCTAGCATACCTTCATGAAGGTTGTGCTGTAAAGATTATACACAGAGATATAAAAACGAGCAATGTTCTCCTCGATGAGAACCTTACTCCAAAGATTGCCGACTTCGGACTTGTTCGATGTGCTGATCCTGAGAGAACTCATGTCAGCACTGGAATTGCAGGAACACTAGGATATATGGCTCCCGAATATCTCGTTCGAGGACAACTGACAGAAAAGGCAGATATATATGCATTTGGGGTTATGATTCTTGAGGTTGCTTGTGGCAAGAAAAATACTATTTTCACACAGGGATCAAATTCTGTTCTGCATTCTGTATGGAAGAATTACAAGGCAAATCATATTACTGATTCTATTGACTCTGCCTTGAAAGTTGATCTTCCCAAGAATCAGGCATCAAAAGTCCTTCAGATTGGGCTGCTGTGCACACAAGCCCGTGGTAGTCTAAGACCATATATGTCTGAGGTAGTTCAGATGCTGAAAAATGAAGACTCTGTAGTTCCCGCGCCAAAACAACCGCCATTCCTAAATTCAAGTGTTCTAAATGTTGAGGACTCTTTCAAAAGCAGTTCAGGGAGCTTAACAGGCTTATATGGGAGAGAATTCAGCGACGCGTCCAGTTTTTATACCGTTGAATCTACCACCTCTTTCAGCAGGAGGACGACCCAACTAAAAGATACATCAAGAAATGAATCATTTGATCCATGA 2022 41.84 MQLPINIPQNPVWALVGFFIFLSLSSFPLVVSKNPDVGIICGRNLSINANVGSNVGRIMDIISTMIDASQWGYHNASIPHARIYAFSQCYTGLSQEDCSECFRRSRRRINQCLPDRTGRVYRDGCYLRYDKYDFFKESVNHRFDQIKCGSLTDNADDVVIKKEFANRVHRVITNVTNTALVNNGFAVMEERGGVDGIYAIAQCWKTVSEEGCSKCLTHAVSAIAKGCVSAKEGQALYAGCYVKYSTERFFNIRDMDVDVKEKDFRIGFVVAGWLSLFSLLLLAFFGAHLGYMKLSLIKKKEVNNNATKASEYTSKTNFKYEVLEKATDSFHVSRKLGQGGAGSVYKGIFPDGKIVAVKRLFFTNRQWADEFFNEVNLIGGIQHKNLVKLLGCSIEGPESLLVYEYVPNKSLNQVLFATNTSMILSWKQRFDIVLGIAEGLAYLHEGCAVKIIHRDIKTSNVLLDENLTPKIADFGLVRCADPERTHVSTGIAGTLGYMAPEYLVRGQLTEKADIYAFGVMILEVACGKKNTIFTQGSNSVLHSVWKNYKANHITDSIDSALKVDLPKNQASKVLQIGLLCTQARGSLRPYMSEVVQMLKNEDSVVPAPKQPPFLNSSVLNVEDSFKSSSGSLTGLYGREFSDASSFYTVESTTSFSRRTTQLKDTSRNESFDP 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2243040 2246181 + evm.model.ptg000005l.1167 HCH3g0350 541078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0350 673 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 173 628 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
HCH3g0350 673 CDD STKc_IRAK 336 600 - -
HCH3g0350 673 ProSiteProfiles Gnk2-homologous domain profile. 146 249 IPR002902 -
HCH3g0350 673 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
HCH3g0350 673 Gene3D Phosphorylase Kinase; domain 1 291 405 - -
HCH3g0350 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0350 673 ProSiteProfiles Protein kinase domain profile. 330 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0350 673 Pfam Protein kinase domain 330 596 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0350 673 FunFam Cysteine-rich receptor-like protein kinase 2 406 606 - -
HCH3g0350 673 Gene3D Transferase(Phosphotransferase) domain 1 406 607 - -
HCH3g0350 673 Gene3D - 148 249 IPR038408 -
HCH3g0350 673 Gene3D - 40 134 IPR038408 -
HCH3g0350 673 Pfam Salt stress response/antifungal 53 132 IPR002902 -
HCH3g0350 673 Pfam Salt stress response/antifungal 160 246 IPR002902 -
HCH3g0350 673 SUPERFAMILY Protein kinase-like (PK-like) 313 618 IPR011009 -
HCH3g0350 673 FunFam Cysteine-rich receptor-like protein kinase 3 144 249 - -
HCH3g0350 673 SMART serkin_6 330 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0350 673 FunFam Cysteine-rich receptor-like protein kinase 2 297 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0350 HCH-Chr3:2243040 HCH4g0039 HCH-Chr4:241828 1.60E-124 dispersed
HCH1g1050 HCH-Chr1:58350804 HCH3g0350 HCH-Chr3:2243040 1.20E-140 wgd
HCH3g0350 HCH-Chr3:2243040 HCH4g0038 HCH-Chr4:237869 4.00E-120 wgd
HCH3g0350 HCH-Chr3:2243040 HCH9g0130 HCH-Chr9:723123 1.60E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81381 PF00069 Pkinase 1.60E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0350 - - - 0.0