Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0362 ATGGCTTCATCAACCATTTATTACAGCCCTTGTGCTGCCTGCAAGTTCCTGAGGAGGAAATGCTTACCAGGATGCATTTTTGCTCCTTACTTCCCACCAGAAGAACCCCAAAAGTTTGCCAATGTCCATAAAATTTTTGGAGCAAGCAACGTGACTAAGCTTCTGAATGAGGTTCTTCCTCATCAAAGAGAAGATGCAGTGATTTCTCTTGCCTATGAGGCTGAAGCAAGAATAAGAGATCCTGTATATGGCTGTGTTGGAGCCATTTCATCCCTTCAAAAGCAAGTCCAGAGGCTCCAGAAGGAACTTGATGGGGCTAATGCTCATCTTCTTTACTACTCTTCCAGTGATATTTCATCACCTTTGTTCCCACCATCAGTTGGCAGATTTGGGAATGAATTTGCAGGATATTCAACTCAGCCTCCTCATACTTTGCTTCCGATCGATTCGCTCGTTTGGAGTGATACGTCTTCCATGTACATCAATGGAGGAAAAGCAGGCTACATGTGA 510 43.92 MASSTIYYSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNEVLPHQREDAVISLAYEAEARIRDPVYGCVGAISSLQKQVQRLQKELDGANAHLLYYSSSDISSPLFPPSVGRFGNEFAGYSTQPPHTLLPIDSLVWSDTSSMYINGGKAGYM 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2309309 2309818 - evm.model.ptg000005l.1155 HCH3g0362 541090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0362 169 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
HCH3g0362 169 Coils Coil 89 109 - -
HCH3g0362 169 Pfam Lateral organ boundaries (LOB) domain 10 105 IPR004883 -
HCH3g0362 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0362 HCH-Chr3:2309309 HCH3g0911 HCH-Chr3:7895873 1.80E-37 dispersed
HCH13g0848 HCH-Chr13:8747991 HCH3g0362 HCH-Chr3:2309309 4.10E-47 wgd
HCH3g0362 HCH-Chr3:2309309 HCH8g1410 HCH-Chr8:48776485 9.60E-55 wgd
HCH3g0362 HCH-Chr3:2309309 HCH9g0123 HCH-Chr9:676969 6.30E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33305 PF03195 LOB 5.20E-42 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0362 - - - 0.0