Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0374 ATGGCTCAGGATTCGACATTGGATCAAAATGTGGAAGATTCTGATAACGAGTTCGTTGAGATTGATCCTACTGGTCGATATGGACGGTATAAGGAAATTTTAGGCAAAGGAGCGTTCAAAAAAGTATATCGGGCTTTTGATGAATTGGAGGGAATTGAAGTAGCTTGGAATCAGGTCAAGGTAACAGATCTGTTGCGGAATTCTGAAGATTTAGAGCGACTCTATTCAGAAGTACATTTGCTCAAGACATTGAAACACAAGAACATAATTAAATTTTACAATTCATGGGTCGATACAAAAACCGAAAATATCAACTTCATTACGGAGATATTCACTTCCGGAACACTACGGCAATATAGGAAGAAGCACAAGCATGTTGATTTGAGGGCACTAAAAAAGTGGTCAAGACAGATATTGGAGGGCCTTCTGTATCTTCACAGTCATGATCCACCAGTCATCCACCGAGATTTAAAATGTGACAACATTTTTGTCAATGGAAACCAAGGCGAGGTGAAAATCGGTGACCTAGGACTTGCTGCCATTCTTCAGCAGGCTCGTTCAGCTCACAGTGTTATTGGTACTCCGGAGTTTATGGCCCCGGAGCTTTATGAGGAGGAATATAATGAGCTTGTGGATATTTATGCCTTTGGCATGTGTTTACTAGAGCTTGTTACCTTTGAATATCCATATGTGGAATGTGCAAATGCTGCTCAAATCTATAAGAAAGTCACATCAGGAATAAAGCCTGCTTCATTGGCTAAAGTCTCGGATCCTGGAGTTAGAGCATTTATTGAAAAATGTATTGCAAAGGCCTCTTATCGCTTGCCCGCAAAAGATCTTTTAAGGGATCCATTTCTCCAAGCAGATGATGATCATGGAAATATATCGCATCGTTTACCAGCCTACCCACATTATACAGAAGGAAGAAGAAATCAGATCTATATTGATAGAAGTGCTGATGATACTTCTGCGGAGACGAGTAGAGACTTTAGTATGGAAGGTCAGAGAACAGATGTTAACACGATATTTCTCAAACTTCGAATTGCAGACTCCTCAGGCAATTTTCGCAATATCCATTTCCCATTTGATATTGAAGCCGACACATCAATTTCTGTTGCTAGTGAAATGGTTGAGGAGTTGGACCTCACAGATCAAGATGTCTCAACAATTTCTGAAATGATTGATTCAGAAATTCGATCTTACATTCCAAATTGGACATCAATTGAATATCCTGCTGATAATTTAGGCGCAGAAGTAGAATTATTGAATAGCCCTCCATCTGAAACGAAGGATGGCCCCTCCCCCTTGTCCATTGAATCTGTGCCTTCTGCCAATCTTGCTTTAGAGGTTATGTCATCAGGTCGTAAGTACTGGTCTGATTCTCCAAAGGGAGTTGGTGGAAGCTCTCCTGCTAAGCTAGGTCCCTCAAACTTGTCATTTACCTCTGATCTGAATGCAGAATCTTCTTACAGCCATATACATGGGGATAATTCAGATCATGCCGCTATACTTGAGGAGCTTGAGCTTCTGTCCGATGATAATGCTAATGCTGGACAGGATGAAGGTAGTAGAGTTGATGCTCTGGATACCGTTGGTGAAAGTAGATCAACTACAAATCTTCATGTTGAATCTGGAGCACTTGGAGCTTCAGAACATAATGATTCACAAGACACCGAGATAATAGCCCAGAAACTTGAGAATCTGTTGACGCAGCAGAAAAAGGAATTAGATGAACTAAAGAGGAAGCATTATGTAGCTATCTCGGAATTTTTGAATGAACTGACGCCCGAGTCCTATCAAGAGGTCTTAAGGAAGTGCAAGCTAAAGCTTTCTGAATATGAATTGGTTTTGTGA 1854 40.67 MAQDSTLDQNVEDSDNEFVEIDPTGRYGRYKEILGKGAFKKVYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKTENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYVECANAAQIYKKVTSGIKPASLAKVSDPGVRAFIEKCIAKASYRLPAKDLLRDPFLQADDDHGNISHRLPAYPHYTEGRRNQIYIDRSADDTSAETSRDFSMEGQRTDVNTIFLKLRIADSSGNFRNIHFPFDIEADTSISVASEMVEELDLTDQDVSTISEMIDSEIRSYIPNWTSIEYPADNLGAEVELLNSPPSETKDGPSPLSIESVPSANLALEVMSSGRKYWSDSPKGVGGSSPAKLGPSNLSFTSDLNAESSYSHIHGDNSDHAAILEELELLSDDNANAGQDEGSRVDALDTVGESRSTTNLHVESGALGASEHNDSQDTEIIAQKLENLLTQQKKELDELKRKHYVAISEFLNELTPESYQEVLRKCKLKLSEYELVL 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2372024 2375364 - evm.model.ptg000005l.1143 HCH3g0374 541102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0374 617 Gene3D - 340 412 - -
HCH3g0374 617 FunFam probable serine/threonine-protein kinase WNK9 111 291 - -
HCH3g0374 617 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 586 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
HCH3g0374 617 SMART serkin_6 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0374 617 FunFam Probable serine/threonine-protein kinase WNK1 12 109 - -
HCH3g0374 617 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0374 617 Coils Coil 555 582 - -
HCH3g0374 617 CDD STKc_WNK 26 286 - -
HCH3g0374 617 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 344 398 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
HCH3g0374 617 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
HCH3g0374 617 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0374 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0374 617 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
HCH3g0374 617 Gene3D Phosphorylase Kinase; domain 1 11 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0374 HCH-Chr3:2372024 HCH7g1726 HCH-Chr7:49040484 1.40E-143 dispersed
HCH3g0374 HCH-Chr3:2372024 HCH6g1589 HCH-Chr6:49078327 2.50E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81383 PF00069 Pkinase 1.40E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0374 K08867 - csv:101206177 924.08