Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0392 ATGCTACTGTTTATTGTGAGTTTGCTATCGTTAACATTACTGATCAGTATCTTTCATCTGGGTTGTTCGTCTGATTTCATTTTCAATTCCACTGTCTCGTCGGATGGAGCAGCTGATTTCACTAGGATCATGGACGCTGTGGCTGCCGCACCGGATGACAGTAACGTTAGATTTTATATTCATGTGCTGCCGGGAGTTTACAACGAAAATGTCGAAATACCTGGCAAAAAGACTTTCATTGCTCTCATTGGAGATGATGCATCCTCCACTGTCATTGTTGATAATCGGAGCAACGAGACGGGATTTGGAACCTCAAAATCAGCAACCTTCACGGTTACAGGTTGGAACTTTATGGCCCAATATATAACGTTCCAAAATTCTGCTGGTCCTAGCCATGGTCAAGGAGTAGCCCTCCTTGATCAAGCAAACAAAACCGTTTACTACCGATGCATATTTTTTGGTTTTCAAGACACATTATATGTTAAAGGAGGGGAGACATTCTTCAAAGAATGTGAAATCTACGGGACAGTAGATTTTATATTTGGCGATGCAGCTGCTGTTTTTCAAGACTGCAAAATTTATGCAAGATTGCCGAATACCACGATTACAGTCACAGCACAGTCGAAAGAATTAGAGTGGCCAAAGAGTGGGTTCTCATTCCAGAACTGCATTGTTGCAGCTTCTCCTGAACTCTTATCAGGAAAAAACGATGTCAAAGTTTATCTTGGCCGACCTTGGAGAAAATACTCGACAGTTATTTTTATGGAGTGCTTCCTGGATGATATCGTCAATCCAGATGGGTGGTCTGAATGGCCGGGGGTGCCGATGGACTTGTTATATTATGCCGAGTTCAGCAATAGCGGTCCAGGAGCTGATACCTCCCATAGAATTACATGGCCGGGTTATCATGTATTAAATAATAGCGCGGAAGCTATTAATTTTACGGTTGAAAACTTCATCAATGGAAATGAGTGGTTGCCGGAGACGGGTGTTCCCTTTCGACAAGGCCTAACTCCGCCAACTGCATCGGCAGCGGCCAAGATGAAAAAAGAAGTGATGTTTTTATGGTTTATTATCATATTCTTAATATATTAG 1095 42.28 MLLFIVSLLSLTLLISIFHLGCSSDFIFNSTVSSDGAADFTRIMDAVAAAPDDSNVRFYIHVLPGVYNENVEIPGKKTFIALIGDDASSTVIVDNRSNETGFGTSKSATFTVTGWNFMAQYITFQNSAGPSHGQGVALLDQANKTVYYRCIFFGFQDTLYVKGGETFFKECEIYGTVDFIFGDAAAVFQDCKIYARLPNTTITVTAQSKELEWPKSGFSFQNCIVAASPELLSGKNDVKVYLGRPWRKYSTVIFMECFLDDIVNPDGWSEWPGVPMDLLYYAEFSNSGPGADTSHRITWPGYHVLNNSAEAINFTVENFINGNEWLPETGVPFRQGLTPPTASAAAKMKKEVMFLWFIIIFLIY 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2549703 2550904 + evm.model.ptg000005l.1125 HCH3g0392 541120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0392 364 PANTHER PECTINESTERASE 29 328 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH3g0392 364 FunFam Pectinesterase 4 27 337 - -
HCH3g0392 364 Pfam Pectinesterase 30 323 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH3g0392 364 ProSitePatterns Pectinesterase signature 2. 173 182 IPR033131 -
HCH3g0392 364 Gene3D - 27 337 IPR012334 -
HCH3g0392 364 SUPERFAMILY Pectin lyase-like 30 336 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0316 HCH-Chr3:2008347 HCH3g0392 HCH-Chr3:2549703 7.70E-119 dispersed
HCH3g0392 HCH-Chr3:2549703 HCH4g1042 HCH-Chr4:6698670 5.20E-82 dispersed
HCH3g0388 HCH-Chr3:2537195 HCH3g0392 HCH-Chr3:2549703 1.60E-179 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0392 K01051 - csv:105435364 419.468