Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH3g0395 | ATGGCATTTCCTTCTCTCTCTTTCTCACTCCTCTTCCTCTTCTCTCTCTCCTTCTTATTCTCTCTCTTAACCCCCACCACTCTTGCTTCTCCCTCCGTCGTTCAAGACCCGGAACTCGTCGTACAAGAAGTACACAGGAGTATCATCAATGCAACTAAGAGGAGAAATTTATCATTTCTCTCTTGTGGGACCGGAAACCCCATTGACGATTGTTGGCGTTGTGATCCCAATTGGGAAAAGAGTCGCCAGAAACTCGCCGACTGCGCAATCGGCTTCGGTAAAAACGCCATCGGCGGCAGAGACGGTGAAATCTACGTCGTCACGGATTCCTCCGACGATGACGTAATCAATCCAAAACCGGGAACTCTCCGTTACGCAGTGATTCAAGACGAGCCATTGTGGATAACATTCGCACGTGACATGGTGATTAAACTGAAAGAAGAACTGATAATGAATTCGTTCAAAACAATCGACGGCCGAGGATCGAGCGTTCACATCGCCGGCGGGCCATGCATCACGATTCAATACGTGACGAATATTATAATTCATGGGATTAACATTCACGATTGCAAGCAAGGGGGGAACACGGACGTGAGAGATTCGCCGCGTCATTTCGGGTTCCGGACGATATCGGACGGCGACGGGGTTTCGATATTCGGCGGGAGTCATGTTTGGGTTGACCATTGTTCTTTGTCGAATTGTAACGACGGTTTAATCGATGCAATTCACGGGTCGACGGCGATTACCATCTCCAATAATTATATGACTCATCATGATAAGGTTATGTTGTTGGGTCATAGTGATTCCTATACCCAAGACAAGAATATGCAAGTTACTATTGCTTTTAATCACTTTGGTGAAGGCCTCGTCCAACGTATGCCCAGATGTAGGCATGGATATTTTCATGTGGTGAATAATGACTACACACATTGGGAAATGTATGCCATTGGAGGGAGTGCAGCACCAACAATCAATAGTCAAGGGAACAGATTTTTAGCACCAGATGACAGGTTCAGCAAGGAAGTAACAAAGTACGAGGAAGCACCGGAAAGTGAATGGAAGAATTGGAATTGGAGATCCGAAGGTGATTTAATGTTAAACGGTGCGTTTTTTACGGCATCCGGCGCCGGAGCTTCGTCTAGTTATGCTAGAGCTTCTAGCTTGGGAGCAAGGCCTTCTTCACTTGTTGGTTCAATTACTTCCTATGCGGGTACATTGAGCTGCAAAAGGGGCTCCCGTTGCTGA | 1245 | 46.75 | MAFPSLSFSLLFLFSLSFLFSLLTPTTLASPSVVQDPELVVQEVHRSIINATKRRNLSFLSCGTGNPIDDCWRCDPNWEKSRQKLADCAIGFGKNAIGGRDGEIYVVTDSSDDDVINPKPGTLRYAVIQDEPLWITFARDMVIKLKEELIMNSFKTIDGRGSSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPDDRFSKEVTKYEEAPESEWKNWNWRSEGDLMLNGAFFTASGAGASSSYARASSLGARPSSLVGSITSYAGTLSCKRGSRC | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2574366 | 2575986 | - | evm.model.ptg000005l.1122 | HCH3g0395 | 541123 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH3g0395 | 414 | SMART | amb_all | 140 | 337 | IPR002022 | - | |
HCH3g0395 | 414 | Gene3D | - | 65 | 407 | IPR012334 | - | |
HCH3g0395 | 414 | PRINTS | Pollen allergen Amb family signature | 212 | 233 | IPR018082 | - | |
HCH3g0395 | 414 | PRINTS | Pollen allergen Amb family signature | 112 | 137 | IPR018082 | - | |
HCH3g0395 | 414 | PRINTS | Pollen allergen Amb family signature | 314 | 333 | IPR018082 | - | |
HCH3g0395 | 414 | PRINTS | Pollen allergen Amb family signature | 148 | 164 | IPR018082 | - | |
HCH3g0395 | 414 | PRINTS | Pollen allergen Amb family signature | 356 | 380 | IPR018082 | - | |
HCH3g0395 | 414 | PRINTS | Pollen allergen Amb family signature | 88 | 105 | IPR018082 | - | |
HCH3g0395 | 414 | PRINTS | Pollen allergen Amb family signature | 385 | 408 | IPR018082 | - | |
HCH3g0395 | 414 | PRINTS | Pollen allergen Amb family signature | 292 | 311 | IPR018082 | - | |
HCH3g0395 | 414 | Pfam | Pectate lyase | 148 | 331 | IPR002022 | - | |
HCH3g0395 | 414 | SUPERFAMILY | Pectin lyase-like | 41 | 408 | IPR011050 | - | |
HCH3g0395 | 414 | PANTHER | PECTATE LYASE 18-RELATED | 21 | 411 | IPR045032 | GO:0030570(InterPro) | |
HCH3g0395 | 414 | FunFam | Pectate lyase | 65 | 407 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0895 | HCH-Chr13:10187138 | HCH3g0395 | HCH-Chr3:2574366 | 1.50E-173 | dispersed | |
HCH3g0395 | HCH-Chr3:2574366 | HCH7g1401 | HCH-Chr7:46751094 | 2.60E-162 | dispersed | |
HCH3g0395 | HCH-Chr3:2574366 | HCH4g0072 | HCH-Chr4:395562 | 3.30E-181 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH3g0395 | K01728 | - | csv:101209736 | 734.176 |