Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0395 ATGGCATTTCCTTCTCTCTCTTTCTCACTCCTCTTCCTCTTCTCTCTCTCCTTCTTATTCTCTCTCTTAACCCCCACCACTCTTGCTTCTCCCTCCGTCGTTCAAGACCCGGAACTCGTCGTACAAGAAGTACACAGGAGTATCATCAATGCAACTAAGAGGAGAAATTTATCATTTCTCTCTTGTGGGACCGGAAACCCCATTGACGATTGTTGGCGTTGTGATCCCAATTGGGAAAAGAGTCGCCAGAAACTCGCCGACTGCGCAATCGGCTTCGGTAAAAACGCCATCGGCGGCAGAGACGGTGAAATCTACGTCGTCACGGATTCCTCCGACGATGACGTAATCAATCCAAAACCGGGAACTCTCCGTTACGCAGTGATTCAAGACGAGCCATTGTGGATAACATTCGCACGTGACATGGTGATTAAACTGAAAGAAGAACTGATAATGAATTCGTTCAAAACAATCGACGGCCGAGGATCGAGCGTTCACATCGCCGGCGGGCCATGCATCACGATTCAATACGTGACGAATATTATAATTCATGGGATTAACATTCACGATTGCAAGCAAGGGGGGAACACGGACGTGAGAGATTCGCCGCGTCATTTCGGGTTCCGGACGATATCGGACGGCGACGGGGTTTCGATATTCGGCGGGAGTCATGTTTGGGTTGACCATTGTTCTTTGTCGAATTGTAACGACGGTTTAATCGATGCAATTCACGGGTCGACGGCGATTACCATCTCCAATAATTATATGACTCATCATGATAAGGTTATGTTGTTGGGTCATAGTGATTCCTATACCCAAGACAAGAATATGCAAGTTACTATTGCTTTTAATCACTTTGGTGAAGGCCTCGTCCAACGTATGCCCAGATGTAGGCATGGATATTTTCATGTGGTGAATAATGACTACACACATTGGGAAATGTATGCCATTGGAGGGAGTGCAGCACCAACAATCAATAGTCAAGGGAACAGATTTTTAGCACCAGATGACAGGTTCAGCAAGGAAGTAACAAAGTACGAGGAAGCACCGGAAAGTGAATGGAAGAATTGGAATTGGAGATCCGAAGGTGATTTAATGTTAAACGGTGCGTTTTTTACGGCATCCGGCGCCGGAGCTTCGTCTAGTTATGCTAGAGCTTCTAGCTTGGGAGCAAGGCCTTCTTCACTTGTTGGTTCAATTACTTCCTATGCGGGTACATTGAGCTGCAAAAGGGGCTCCCGTTGCTGA 1245 46.75 MAFPSLSFSLLFLFSLSFLFSLLTPTTLASPSVVQDPELVVQEVHRSIINATKRRNLSFLSCGTGNPIDDCWRCDPNWEKSRQKLADCAIGFGKNAIGGRDGEIYVVTDSSDDDVINPKPGTLRYAVIQDEPLWITFARDMVIKLKEELIMNSFKTIDGRGSSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPDDRFSKEVTKYEEAPESEWKNWNWRSEGDLMLNGAFFTASGAGASSSYARASSLGARPSSLVGSITSYAGTLSCKRGSRC 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2574366 2575986 - evm.model.ptg000005l.1122 HCH3g0395 541123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0395 414 SMART amb_all 140 337 IPR002022 -
HCH3g0395 414 Gene3D - 65 407 IPR012334 -
HCH3g0395 414 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
HCH3g0395 414 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
HCH3g0395 414 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
HCH3g0395 414 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
HCH3g0395 414 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
HCH3g0395 414 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
HCH3g0395 414 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
HCH3g0395 414 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
HCH3g0395 414 Pfam Pectate lyase 148 331 IPR002022 -
HCH3g0395 414 SUPERFAMILY Pectin lyase-like 41 408 IPR011050 -
HCH3g0395 414 PANTHER PECTATE LYASE 18-RELATED 21 411 IPR045032 GO:0030570(InterPro)
HCH3g0395 414 FunFam Pectate lyase 65 407 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0895 HCH-Chr13:10187138 HCH3g0395 HCH-Chr3:2574366 1.50E-173 dispersed
HCH3g0395 HCH-Chr3:2574366 HCH7g1401 HCH-Chr7:46751094 2.60E-162 dispersed
HCH3g0395 HCH-Chr3:2574366 HCH4g0072 HCH-Chr4:395562 3.30E-181 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0395 K01728 - csv:101209736 734.176