Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0428 ATGGCCGTCGCCGCCGATCCCCGGAGCGGTTTCAACCCACAAACCAAAACCTTCCACTCTCTCCGACCGCGAATCCCACTCCCACCCATATCTCAACCTCTCTCCATTTCAAATTACATCTTTACCCTCATCCACTCCTCCCCGCCGGCGACTAACACCACCGTCCTCATCGACTCTATCTCCGGCCACCATATTTCTTACCCAGCTTTCCTCCGTCAAATCCAAATTCTTTCTTCAAATCTAAAACCTCTCCTTTCCAAAAATCAAGTAGCTTTCATTCTCGCTCCTTCTGCTCTCCACGTCCCGGTTTTGTATCTCTCTCTCTTATCTCTCGGCGTCGTTATCTCTCCCGCTAACCCGACTGGGTCCGGTTCAGAAATCGCTCATCAAATCCATCTCTCTAAACCAGTTATTGCTTTCGCTACTTCCGAAACCGCCTTCAAGCTTCCGCCGCTCCCTCTCGGCACGATTCTGATTGATTCGCCGGAGTTTCTGACTTTGATGAATGAGAAAAAATCAACGAACGAGATTGATTGTGAAATCGATCAATCTGATTCGGCGGCGATTCTCTATTCGTCGGGGACGACAGGACGAGTAAAAGGCGTGGTATTGACTCATCGGAACCTAATTGCGGTGATTGCTGGGTTTTATAATTTGAAATTTGAGGTTGATTCTGAGGAGATTGAGCCGCACCCGGTTTCGTTGTTTACGTTGCCTTTATTTCATGTTTTTGGATTCTTCATGATGCTTAGAGCGGTTGCGAGAGGGGAAACTCTGGTTTTGATGCAAAGATTTGATTTTGAGGGAATGTTGAGAGCTGTGGAGAAGTTTAGGATTACTTATATTCCGGTTTCCCCGCCGTTGGTGGTGGCGTTGGCGAAGTCAGAGTTGGTTGGGAAGTATGATCTTAGTTCTCTTCGGCTTATCGGATGCGGCGGAGCTCCGCTTGGGAAGGAGGTGGTGGAGGCATTTCATGAGCAGTTCCCTAATGTAGATATTTCTCAGGGATATGGTTTGACAGAGAGTACAGGAGGGGCTGCAAGGAGTTTGGGGCCGGATGAGGGCAAGAACACGAGTTCAGTAGGTCGTCTAGCTGAAAATATGGAAGCCAAGATAATGGATCCTGAGTCTGGAGAGGCATTACCTCCTGGCCAGAGAGGAGAACTTTGGTTGAGAGGTCCATCAATCATGAAAGGTTATGTGGCAGATGACAAGGCAACTGCTGAAACCTTGGATCCAGAGGGATGGCTAAAGACTGGTGATCTTTGCTATTTTGATTCTGATGGATTCCTCTACATTGTTGACAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCAGCTGAGTTGGAACATTTACTTCAATCCCACCCCGAGATCATCGATGCTGCCGTGATTCCCTATCCAGATGAAGAAGCAGGGGAGATCCCTATGGCTTATGTGGTTAGAAAGCCTGAAAGCAATATCACTGAGGCCCAAGTCATTGATTTCATTGCAAAACAGGTTGCACCATACAAGAAAATCCGGCGAGTATCTTTTATCAGCGCCATTCCGAAATCCCCTGCAGGGAAGATTTTGAGGAGGGAGCTAGTGCAACAAGCTCTCTCTCAAAGTTCCAGTAAGTTATAG 1638 47.44 MAVAADPRSGFNPQTKTFHSLRPRIPLPPISQPLSISNYIFTLIHSSPPATNTTVLIDSISGHHISYPAFLRQIQILSSNLKPLLSKNQVAFILAPSALHVPVLYLSLLSLGVVISPANPTGSGSEIAHQIHLSKPVIAFATSETAFKLPPLPLGTILIDSPEFLTLMNEKKSTNEIDCEIDQSDSAAILYSSGTTGRVKGVVLTHRNLIAVIAGFYNLKFEVDSEEIEPHPVSLFTLPLFHVFGFFMMLRAVARGETLVLMQRFDFEGMLRAVEKFRITYIPVSPPLVVALAKSELVGKYDLSSLRLIGCGGAPLGKEVVEAFHEQFPNVDISQGYGLTESTGGAARSLGPDEGKNTSSVGRLAENMEAKIMDPESGEALPPGQRGELWLRGPSIMKGYVADDKATAETLDPEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSHPEIIDAAVIPYPDEEAGEIPMAYVVRKPESNITEAQVIDFIAKQVAPYKKIRRVSFISAIPKSPAGKILRRELVQQALSQSSSKL 545
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 2743457 2746231 - evm.model.ptg000005l.1089 HCH3g0428 541156
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0428 545 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
HCH3g0428 545 FunFam 4-coumarate--CoA ligase 2 439 540 - -
HCH3g0428 545 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
HCH3g0428 545 Gene3D - 439 541 IPR045851 -
HCH3g0428 545 SUPERFAMILY Acetyl-CoA synthetase-like 61 540 - -
HCH3g0428 545 Gene3D - 20 438 IPR042099 -
HCH3g0428 545 CDD 4CL 28 533 - -
HCH3g0428 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 533 - GO:0016405(PANTHER)
HCH3g0428 545 Pfam AMP-binding enzyme 52 400 IPR000873 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0708 HCH-Chr1:55918110 HCH3g0428 HCH-Chr3:2743457 2.70E-114 dispersed
HCH3g0428 HCH-Chr3:2743457 HCH3g1211 HCH-Chr3:44340792 1.40E-110 dispersed
HCH3g0428 HCH-Chr3:2743457 HCH12g0078 HCH-Chr12:402955 4.90E-132 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0428 K01904 - csv:101213796 770.0